Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_F02
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    29   6.2  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    28   8.2  

>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 374  HSHVMSHRSWQNSNLRL*XCILEKNCLRE-TLNSNGSFGMKTMRARCAATERMSGWFSTT 550
            H+ ++S  +W+N+N +   C+     LR+ +L  N   G++ +    +  + +    S  
Sbjct: 3920 HATLLSTNNWKNANQQYFKCLAMMQQLRQISLKFNKDLGLEEVNRATSFMDHLLSIMSEQ 3979

Query: 551  AHILYS 568
             H  Y+
Sbjct: 3980 RHFAYN 3985


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 345  FDALYNADACTLTSCPTEAGKTQTLDF 425
            F  LYN D   L + PT +GKT   +F
Sbjct: 1370 FTVLYNTDDSVLVAAPTGSGKTICAEF 1396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,785,807
Number of Sequences: 37544
Number of extensions: 253946
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)