Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E24
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0515 - 3864796-3865425                                           30   2.9  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    29   6.7  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   8.9  

>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLP 395
           PPPPP             P PP     P P     PP  P
Sbjct: 72  PPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSP 111


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     P   P  P
Sbjct: 73  PPPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLP 115


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLP 395
           PPPPP             P PP       P     PP LP
Sbjct: 589 PPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLP 628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,389,050
Number of Sequences: 37544
Number of extensions: 120357
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)