Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E24
         (905 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  32   0.73 
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   5.2  

>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP  P  P
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPP 423



 Score = 31.5 bits (68), Expect = 0.97
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP  P  P
Sbjct: 379 PPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP 421



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP  P  P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPP 408



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP  P  P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPP 411



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP  P  P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPP 413



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP  P  P
Sbjct: 372 PPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPP 414



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP  P  P
Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAP 420



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP  P  P
Sbjct: 382 PPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP  P  P
Sbjct: 389 PPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431



 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXL 398
           PPPPP             P PP     P P     PP L
Sbjct: 396 PPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPAL 434



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPP P    +        P PP     P P     PP  P  P
Sbjct: 385 PPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427



 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = -2

Query: 511 PPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPP             P PP     P P     PP  P  P
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPP 406



 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P  P     P P     PP  P  P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPP     +        P PP     P P     PP  P  P
Sbjct: 328 PPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPP 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,310,860
Number of Sequences: 59808
Number of extensions: 56967
Number of successful extensions: 302
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)