Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E24
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   3.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   3.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   3.5  
Z68750-1|CAA92963.1|  284|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLP 395
           PPPPP             P PP     P P     PP  P
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPP 276



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP     P
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLP 395
           PPPPP             P PP     P P     PP  P
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPP 297



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP     P
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLP 395
           PPPPP             P PP     P P     PP  P
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPP 282



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = -2

Query: 514 PPPPPXXXXKXXXXXXXXPXPPXXXXXPXPXXXXXPPXLPXXP 386
           PPPPP             P PP     P P     PP     P
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303


>Z68750-1|CAA92963.1|  284|Caenorhabditis elegans Hypothetical
           protein K01A6.4 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +3

Query: 387 GXXGXXGGFXXXXGXGXXXXKGGLGXXXXXXXFXXFXXGGGGG 515
           G  G  GGF    G G    +GG G       F     GG GG
Sbjct: 52  GFGGMQGGFGGQSGFGGGSSQGGFGGFGQQGGFGGNSQGGFGG 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,124,539
Number of Sequences: 27780
Number of extensions: 59474
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)