Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E23
         (933 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64990.1 68414.m07366 expressed protein contains similarity t...    29   3.3  
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    29   4.4  

>At1g64990.1 68414.m07366 expressed protein contains similarity to
           putative G-protein coupled receptor GI:6649579 from
           [Homo sapiens]
          Length = 468

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -3

Query: 436 FPYIYLIVFIPSFIVLYISLR-----KERALIRRYQLLYAFLFAFGQCDETIVVPLAASV 272
           F  I L+VF+  +   Y+ LR     +ERA +  +  L AFL+AF +    +  P+ ++ 
Sbjct: 83  FCLILLLVFMLPYYHCYLMLRNSGVRRERASVGAFLFLSAFLYAFWRMG--VHFPMPSAD 140

Query: 271 NEFFT 257
             FFT
Sbjct: 141 KGFFT 145


>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 131 ACLTSVMSDKPTTKPICEQAFGN 199
           AC+T++ S  P   PI EQ+F N
Sbjct: 13  ACVTAINSSPPPLSPISEQSFNN 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,050,802
Number of Sequences: 28952
Number of extensions: 133530
Number of successful extensions: 318
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)