Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E22
         (871 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   48   1e-05
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   3.7  
SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)             29   3.7  
SB_57324| Best HMM Match : ig (HMM E-Value=1e-26)                      29   4.9  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   6.5  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   8.6  
SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +2

Query: 710 RCTWGPSYWCSNFSTGRECNATPHCINRVWSKMTFPEDXDNIC 838
           RC +GP+YWC +    +EC+A  HC N VW    + +D   IC
Sbjct: 361 RCVYGPAYWCRSLEHAQECDAVEHCKNSVWK---YNQDTCAIC 400



 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 23/53 (43%), Positives = 29/53 (54%)
 Frame = +3

Query: 207 VCLLSLTFLCCTNLSFARQVPKECAKGPQVWCESLKRGAECGAVGHCTATVWE 365
           VCLL+ T    T+  F    P+ C  GP  WC SL+   EC AV HC  +VW+
Sbjct: 345 VCLLAAT----THAKFVGN-PR-CVYGPAYWCRSLEHAQECDAVEHCKNSVWK 391


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -2

Query: 666 CFSCSTK*YXPISCCYTCRRFCTLSRPMCSI*ERDVCNFRNGPCCLC 526
           C SC    Y     CY+CR  C   R +C       C+ R   CC C
Sbjct: 171 CCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVVFCSCRVA-CCSC 216



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = -2

Query: 666 CFSCSTK*YXPISCCYTCRRFCTLSRPMCSI*ERDVCNFRNGPCCLC 526
           C+SC    Y     C +CR  C   R  C    R VC      CC C
Sbjct: 220 CYSCRVVCYSCRVACCSCRVVCYSCRVACCS-CRVVCYSCRVACCSC 265


>SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)
          Length = 280

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = -1

Query: 502 WISWHADSM-LAARYSSLIRSLTSLSPRN-SFTNF-DDISLSETSGFCFSHTVAVQCPTA 332
           W+  H DS  +AA     +R    +   N    N+ DD ++SET     S  +       
Sbjct: 34  WLKPHIDSNNVAASGLKYLRDRELIDHDNMELWNYVDDTTISETIARESSSNIQAAVDAL 93

Query: 331 PHSAPRFRLSHHTCGPLAHSFGTCRANDKFVQ 236
             SA +F+L+   C  L   F T  +N + +Q
Sbjct: 94  SASADKFKLNERKCKELRIGFSTKPSNFEPIQ 125


>SB_57324| Best HMM Match : ig (HMM E-Value=1e-26)
          Length = 947

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 25/78 (32%), Positives = 35/78 (44%)
 Frame = +2

Query: 536 HGPFRKLHTSRSQIEHIGRDNVQNRRHV*QHEIGXYYFVEQEKHQRARQA*RSAPWKIRC 715
           H   +KL  SR +   I R  V N R + Q + G Y  + + KH   R+    +P K R 
Sbjct: 552 HHNGKKLR-SRRRNHVILRGWVLNIRSLRQSDSGRYTCIVKNKHGTIRRTYIVSPLKSRS 610

Query: 716 TWGPSYWCSNFSTGRECN 769
           T  P+   SN   G + N
Sbjct: 611 TGEPALEPSNAPNGIDIN 628


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 226 RSFVVQICRLRDKYRRNVLRDHKYG 300
           R  +V +C  RD   RNV RDH  G
Sbjct: 17  RKIMVMVCHGRDNGHRNVTRDHGNG 41


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 837  HMLSXSSGKVILDHTRLMQ*GVALHSRPVLKLLHQY 730
            + LS SSGK++ DHT L Q  +   SR   K LH +
Sbjct: 933  YKLSKSSGKLLNDHTDLRQTSLYKLSRSSGKPLHDH 968


>SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 558 IHHVLKSNTSAETMCKIVGMCNNMKLDXIISLNKKSTNV 674
           IHHV+ ++ SA+    I     + K+D I+S +K   ++
Sbjct: 211 IHHVIANDISADAFSLIENNVKHNKVDHIVSASKNDASL 249


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 340 PTAPHSAPRFRLSHHTCGPLAHSFGTCRANDKFVQQRNVRDSRQT 206
           P   H    F + ++   P+      CRANDK V+ ++ R S ++
Sbjct: 121 PQHLHRTYNFSMMNNVRQPIPVLVNNCRANDKLVESQSKRKSARS 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,711,953
Number of Sequences: 59808
Number of extensions: 625041
Number of successful extensions: 1758
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)