Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E19
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          25   0.54 
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           25   0.54 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.1  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   8.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.9  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 390 PPXXPPPXXWXXPSFXXPP 446
           PP   PP  W  P +  PP
Sbjct: 43  PPITYPPSDWNCPQYNAPP 61


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 390 PPXXPPPXXWXXPSFXXPP 446
           PP   PP  W  P +  PP
Sbjct: 34  PPITYPPSDWNCPQYNAPP 52


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 525 PPXXGAPPPPXPXXXXPP 578
           PP  G PP   P    PP
Sbjct: 68  PPSGGQPPQGMPYPRFPP 85



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 527 PXXGRXPPTPXPXPXXPP 580
           P  G  PP   P P  PP
Sbjct: 68  PPSGGQPPQGMPYPRFPP 85


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 402 PPPXXWXXPSFXXPPPP 452
           PP      PS   PPPP
Sbjct: 202 PPTEDCDVPSTIPPPPP 218


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 573 PPPPXPXXSXPPXP 614
           PPPP P    P  P
Sbjct: 736 PPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 573 PPPPXPXXSXPPXP 614
           PPPP P    P  P
Sbjct: 628 PPPPHPHHQPPRNP 641


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,345
Number of Sequences: 336
Number of extensions: 2488
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)