Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E19
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.37 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
 Frame = +3

Query: 525 PPXXGAPPPPXP----XXXXPPPPXPXXSXPPXP 614
           PP  GAP PP P        PP P    S P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMP 443



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +1

Query: 526 PXXGAXPPHPXPXXXXPPPPXLXPPXXHXXXXPXPXXXXPP 648
           P  GA  P P P      P    PP       P      PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 209 IMXPTRPRXTPSGLTIINSTLTXFLLI 129
           I   T+   TPS L +IN  ++ FL++
Sbjct: 76  IFLSTKSLRTPSNLFVINLAISNFLMM 102


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 209 IMXPTRPRXTPSGLTIINSTLTXFLLI 129
           I   T+   TPS L +IN  ++ FL++
Sbjct: 42  IFLSTKSLRTPSNLFVINLAISDFLMM 68


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 549 PPXPXXXXPPPPXPXXSXP 605
           PP P    PPPP P  S P
Sbjct: 338 PPKPA---PPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 528 PXXGAPPPPXPXXXXP 575
           P   APPPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,185
Number of Sequences: 438
Number of extensions: 6008
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)