Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E18
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    27   3.5  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    26   6.2  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    26   6.2  

>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/38 (28%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +1

Query: 166 VNLDMKMKELCIT--KLLDHILQPTMFEDIKEIAKEYN 273
           +N+++K K+L IT  ++++H+L+    ++I+   K+Y+
Sbjct: 10  MNVNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 653 SSGNTTASRVTDDXLVVIDWRKGV 724
           SS  T A RVTD  LVV+D  +GV
Sbjct: 112 SSEVTAALRVTDGALVVVDTIEGV 135


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 653 SSGNTTASRVTDDXLVVIDWRKGV 724
           SS  T A RVTD  LVV+D  +GV
Sbjct: 112 SSEVTAALRVTDGALVVVDTIEGV 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,827
Number of Sequences: 5004
Number of extensions: 61120
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)