Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E18
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    32   0.62 
Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z83116-4|CAB05562.1|  287|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 704 IDWRKGVRRSLSQNDVMSYFMEDVDLNTYMYYLHM 808
           ++W++   + L  N+V     E VD ++YM YL M
Sbjct: 183 VEWKEAYEKKLEDNNVQGNLKEIVDQSSYMDYLRM 217


>Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical
           protein F14F3.3 protein.
          Length = 453

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 220 ILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVK-QFMEMYKMGMLPRGETFVHTNELQME 396
           I+ PT      ++    NIE S D  +N+D+ K +F + ++ GM     +      L + 
Sbjct: 272 IMGPTDLNAFDKLKTRENIEMSSDAIVNLDIPKVEFSDGFRDGMKAWNRSVQTWLALYVH 331

Query: 397 EAVKVFRV 420
             VKV RV
Sbjct: 332 SRVKVMRV 339


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +2

Query: 482 STEACSSTLLLPRASTEPTARVS-TCPLLTRSIPTSSLTAMSSVKPL 619
           + EA SST LL   ST  TA +S T   ++RSI   + TA ++++PL
Sbjct: 91  TNEASSSTKLL---STSSTAEISSTTRTVSRSIKPETSTASTTIRPL 134


>Z83116-4|CAB05562.1|  287|Caenorhabditis elegans Hypothetical
           protein M01B2.4 protein.
          Length = 287

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = -2

Query: 386 SSLVWTKVSPRGSMPILYISMNC-LTTSTFMYLSQLFSMLYSLAISLMSSNMVGWRIWSS 210
           S   + K++   SM  +Y      L  +  + +   + +L SL+ + +  N+  W +W+S
Sbjct: 29  SIFYYKKITVNPSMTFIYWKFGADLFYTLSLSICISYYLLMSLSANFIIKNLTFWLVWAS 88

Query: 209 SFVMQSSFIFMSRFTIGSLVKTIVP 135
           + +     I     +I  +  T +P
Sbjct: 89  TSIGSMRSILALSISIERVFATFIP 113


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 462 RSPHENIEVLSVVEDSEDFD 403
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +2

Query: 479 GSTEACSS---TLLLPRASTEPTARVSTCPLLTRSIPTSSLTAMSSVKPL**R*LKPPRT 649
           G+TE  S+   T      +TEPT   ST    T ++PTS+ T  ++           P T
Sbjct: 257 GTTEETSTEPETTTTSTTTTEPTTTTSTTTQTTTTVPTSTSTISTTSTT-----TTTPTT 311

Query: 650 RSSGNTTASRVTDDXLVV 703
            ++  TT++  +DD L V
Sbjct: 312 TTT--TTSTTTSDDLLWV 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,208
Number of Sequences: 27780
Number of extensions: 347679
Number of successful extensions: 895
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)