Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_E15
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 29 0.65
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 29 0.86
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 29 1.1
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 29 1.1
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 28 2.0
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 2.6
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 4.6
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch... 26 6.1
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 26 6.1
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.1
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 8.0
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 8.0
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 29.5 bits (63), Expect = 0.65
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +3
Query: 387 IYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKY 566
++ + +DGI++ +F++ F+ + +L + G D T N T G
Sbjct: 379 LFPSGSDGIHLVVDEKSNFREEN-FQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGGVK 437
Query: 567 VLDDNLKAVKQVMFDNFN-VLHYVTLDNEVFKVKETLEKIDL 689
D K VK +M N+N V+ + E + + K+D+
Sbjct: 438 GPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDM 479
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 29.1 bits (62), Expect = 0.86
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 441 FKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNK--YVLDDNLKAVKQVMFDN 614
F Y F D + + N +F+ + ++Y V E+GN YVL D + + QV N
Sbjct: 1001 FIAYIRFYVDTV-VNSENVPIVFHLMQRIKQSYDVIEDGNNYIYVLSDMAQKILQVKSQN 1059
Query: 615 F 617
F
Sbjct: 1060 F 1060
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = -1
Query: 668 LFHFKYFIIQSDI----VQYIEVIKHNL--FDGFQIIIQNVFVTIFSDFVSFIVVCYG 513
LFHF F I S + Y + I H+ F + I + FVT+ DFV + +G
Sbjct: 417 LFHFLLFDIGSGLSGSDYTYEQYINHSAVAFSFTEEIFEKNFVTVLPDFVKLFSISFG 474
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 728 ATEXDALFLLVNNDLVVIKSTGILKVVXNLGXSVXIF 838
A+ D F ++NN V+ + G LKVV G + ++
Sbjct: 453 ASPKDTFFDIINNQKYVVNTDGTLKVVITNGFPIVLY 489
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 255 IYTIHADINDNRIEKGVYEVDLNLN 329
+YT+ A IND + K + E D NLN
Sbjct: 117 MYTVSAKINDVEVVKVLLEPDFNLN 141
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 516 VTNDNKAYKVTENG--NKYVLDDNLKAVKQVMFDNFNVLHYVTLDNEVFKV-KETLEK 680
V N N +K+T+ N +D+ + + +DN +V LD+E+ + KE EK
Sbjct: 466 VFNSNNKHKMTKQEFINLCDIDELAPEIMEYYYDNITFTPFVNLDDELLLIEKEKNEK 523
>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 43
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 423 YIHISRHC*LRISCCHHHNINPFLC 349
+IH S HC C +H INP +C
Sbjct: 18 HIHFSHHC------CENHFINPLVC 36
>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 26.2 bits (55), Expect = 6.1
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Frame = +3
Query: 177 SVELYSTEDQVVGAFVISNAEKSDGKIYTIHADINDNRIEKGVYEVDLNLNTTVKILDK- 353
S E++ +VV NAE + I +N I KGVY+ KI+ +
Sbjct: 61 SKEIWDVLHKVVTLLYEGNAEAATEMALAADLTIPENDISKGVYDSKGTFYEIPKIVARI 120
Query: 354 -----GRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKMNGSDLFYAV 518
R DD+ ++SND + D + K + K + + +
Sbjct: 121 PRAFAERKDSLDDEDDNMISSNDPTKSPEEHDTTTKSIASLKDAELDSSL---ETVLIRY 177
Query: 519 TNDNKAYKVTENGN 560
+ D+K Y + N N
Sbjct: 178 SKDDKDYSIQINPN 191
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 319 KSTSYTPFSIRLSLISACIVYILPSLFSALDITKAPT 209
++T S +LS S I + PSL S +TK+P+
Sbjct: 303 RTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPS 339
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 677 KNRFNVKIDYVRXLKSSAT 733
KNRF + ID++R LKS T
Sbjct: 23 KNRFCISIDHLRPLKSHRT 41
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 8.0
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = +3
Query: 420 YKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDNLKAVKQ 599
Y + ++ KA + + N LF + N+NK Y V + + +L + +
Sbjct: 279 YSSPPQTIDPQANIKALITPEDRSNFYQLFSKIDNENKGYIVGGEAVPFFMASHLDSEEL 338
Query: 600 V-MFDNFNVLHYVTLDNEVFKVKETLEKIDLMLKSI 704
++D + +D + F V + K+ L KS+
Sbjct: 339 ARIWDTVDTQDRGYIDKDEFAVAMEIIKLRLSGKSL 374
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 707 RNRF*H*IDFFQSLFHFKYFIIQSDIVQYIEVIKHNLFDGFQII-IQNVFV 558
RN F +DF + +F + +++ +EV+K+ L + + ++ + N++V
Sbjct: 469 RNVFNQDLDFDEKMFSRQLSLVKGQAYNIVEVLKNPLMNIYDLLELPNLYV 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,039
Number of Sequences: 5004
Number of extensions: 60405
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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