Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E15
         (869 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59260.1 68418.m07426 lectin protein kinase, putative similar...    31   1.0  
At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:209756...    30   2.3  
At3g56410.2 68416.m06274 expressed protein                             29   4.0  
At3g56410.1 68416.m06273 expressed protein                             29   4.0  
At3g24535.1 68416.m03081 expressed protein ; expression supporte...    29   5.3  
At2g33190.1 68415.m04066 F-box family protein contains F-box dom...    28   7.1  
At1g48230.1 68414.m05384 phosphate translocator-related low simi...    28   7.1  
At5g23660.1 68418.m02774 nodulin MtN3 family protein similar to ...    28   9.3  
At3g06490.1 68416.m00753 myb family transcription factor (MYB108...    28   9.3  
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr...    28   9.3  

>At5g59260.1 68418.m07426 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 674

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
 Frame = +3

Query: 120 VGLSVTASKVLNGSVFRQRSVELYSTEDQVVG---AFVISNAE--KSDGKIYT---IHAD 275
           + +  TAS + + S   +    ++  +    G   AFV+S  +  +S+G   +   I   
Sbjct: 70  IPIKFTASSLSSFSFSTEFVFAIFPLQKSTYGHGMAFVVSPTKDLRSNGSANSNLGIFNR 129

Query: 276 INDNRIEKGVYEVDLNLNTTVKILDK-GRDLCYDDDSTIYVASNDGIY 416
            NDN+    ++ V+L+ N   +  DK G D+  D +S + V S D  Y
Sbjct: 130 ANDNKTATHIFAVELDTNQNSESFDKGGNDVGIDINSIVSVESADASY 177


>At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:20975609)
           [Arabidopsis thaliana]
          Length = 280

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
 Frame = +3

Query: 255 IYTIHADINDNRIEKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGD 434
           ++ +H  ++ + ++  +  +D+     ++     +DL      T +V  + G  VY T  
Sbjct: 93  LFEVHRKLDSSELKHNLVGLDIGEEFIIR-----KDLKVKAFKTFHVIQSQGYVVYSTKY 147

Query: 435 KSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLD----DNLKAVKQV 602
           K  K+Y     + I   K++G ++  ++     A+   +  + +V+D    D LKA   V
Sbjct: 148 KLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAF-TGDTTSDFVVDETNADALKAKVLV 206

Query: 603 MFDNF 617
           M   F
Sbjct: 207 MESTF 211


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 531  KAYKVTENGNKYVLDDN-LKAVKQ-VMFDNFNVLHYVTLDNEVFKVKETLE 677
            K   V+     +++D+N  +A+K  VM ++   LH    +NE  K++ETLE
Sbjct: 1118 KGIAVSHEEEPWLVDENRTEALKVGVMVEDEPSLHLTKFENETMKLEETLE 1168


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 531  KAYKVTENGNKYVLDDN-LKAVKQ-VMFDNFNVLHYVTLDNEVFKVKETLE 677
            K   V+     +++D+N  +A+K  VM ++   LH    +NE  K++ETLE
Sbjct: 1071 KGIAVSHEEEPWLVDENRTEALKVGVMVEDEPSLHLTKFENETMKLEETLE 1121


>At3g24535.1 68416.m03081 expressed protein ; expression supported
           by MPSS
          Length = 188

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/41 (21%), Positives = 25/41 (60%)
 Frame = -1

Query: 656 KYFIIQSDIVQYIEVIKHNLFDGFQIIIQNVFVTIFSDFVS 534
           +Y++  SD+++++       +  +  +++N F+ ++SDF S
Sbjct: 121 EYYV--SDVIEFLHCYSRLRYTAYLDVVENFFMEVYSDFFS 159


>At2g33190.1 68415.m04066 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 379

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
 Frame = +3

Query: 339 KILDKGRDLCYDDDSTIYVASNDGIYVYKTGDK-----SFKKYGTFKADVI-SLTKMNGS 500
           K L    D  ++  + ++V   +G YV     K     S+KK G    D   S+T     
Sbjct: 146 KFLLTWNDFRFEKTAILWVNGRNGDYVVAWAIKQFYIFSYKKIGNDDDDKRWSITCTQCE 205

Query: 501 DLFYAVTNDNKAYKVTENGNKYVLDDNLKAVKQVMFDNFNVLHYVTLDNEVFKVK 665
           D+ Y    DNK Y  T +    +LD +  + K+ M +N  + H  +  + ++K++
Sbjct: 206 DMAY---KDNKLYVYTFDHYINILDFSGNSPKEPMEENPYLSHPFSFVDAIYKLR 257


>At1g48230.1 68414.m05384 phosphate translocator-related low
           similarity to phosphoenolpyruvate/phosphate translocator
           precursor [Mesembryanthemum crystallinum] GI:9295275,
           SP|P52178 Triose phosphate/phosphate translocator,
           non-green plastid, chloroplast precursor (CTPT)
           {Brassica oleracea}
          Length = 367

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 190 YSSTLRCLKTEPLSTLEAVTLXPTTKMRRVAACSLTF 80
           ++  LR + T+ L   + +TL P T +  +A CS  F
Sbjct: 170 FAEALRLVLTQVLLQKKGLTLNPVTSLYYIAPCSFVF 206


>At5g23660.1 68418.m02774 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 285

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 331 VFRFKSTSYTPFSIRLSLISACIVYILPSL 242
           V + KS  Y PFS+ L+L  + ++++L  L
Sbjct: 157 VIKTKSVEYMPFSLSLTLTISAVIWLLYGL 186


>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
           identical to transcription factor MYB108 GI:15375290
           from [Arabidopsis thaliana]
          Length = 323

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 498 SDL--FYAVTNDNKAYKVTENGNKYVLDDNLKAVKQVMFDNF 617
           SDL  +Y+  N N  Y   + GN Y  D NL +  Q++ DN+
Sbjct: 222 SDLTEYYSAPNPNPEYYSGQMGNSYYPDQNLVS-SQLLPDNY 262


>At1g53430.1 68414.m06056 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1030

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +3

Query: 246 DGKIYTIHADINDNRIEKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYK 425
           + ++  +H DI    +      +DL+LN   KI D G     DD++T       G   Y 
Sbjct: 778 ESRLKIVHRDIKATNVL-----LDLSLNA--KISDFGLAKLNDDENTHISTRIAGTIGYM 830

Query: 426 TGDKSFKKYGTFKADVIS 479
             + + + Y T KADV S
Sbjct: 831 APEYAMRGYLTDKADVYS 848


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,826
Number of Sequences: 28952
Number of extensions: 293397
Number of successful extensions: 821
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)