Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E14
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698...    28   8.3  
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232...    28   8.3  

>07_03_1727 +
           29068348-29068571,29069473-29069514,29069593-29069839,
           29069936-29070013,29070551-29070736,29070829-29071126,
           29071775-29072244
          Length = 514

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 180 RRGQRCSRAQVEALQEN*ESGTQRSRWINQSGSSYSRHRA 299
           +RG++ +RA+ EA +E    GT+R+R + +  +    HRA
Sbjct: 384 KRGEQMARAR-EAAREITPEGTERARVVGEEEAGPEHHRA 422


>03_02_0726 +
           10722759-10722857,10722969-10723058,10723141-10723245,
           10723597-10723698,10724721-10724805,10725281-10725365,
           10725473-10725517,10725685-10728672,10728839-10729055,
           10729193-10729765
          Length = 1462

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 28/85 (32%), Positives = 40/85 (47%)
 Frame = -2

Query: 299 CPMTAIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAPRASTNAKTKLKIRTKFILPK 120
           C   A AG + IN + T     +I LKS   G+ A+L     + N K+ LK   K +LP+
Sbjct: 428 CTPDAAAGQSTINDNVTNN---NIGLKS---GNNASL-----NINNKSSLKPLEKSVLPE 476

Query: 119 XYSAGEFKIPIQXRSTRTLRMSKSL 45
            YSA     P+Q      +R   S+
Sbjct: 477 QYSANRIG-PLQGADGSMMRSDSSI 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,052,535
Number of Sequences: 37544
Number of extensions: 217985
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)