Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_E13
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 148 5e-36
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 148 6e-36
10_01_0049 - 668482-669283,669596-670131,670235-670452,670554-67... 30 2.7
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 29 3.5
10_08_0927 - 21614203-21614219,21615347-21615430,21616529-216166... 29 4.7
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 4.7
01_01_1134 + 8994315-8995892 29 6.2
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 8.2
07_03_1206 + 24878301-24879308 28 8.2
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 28 8.2
01_02_0013 + 10162478-10163581 28 8.2
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 148 bits (359), Expect = 5e-36
Identities = 77/137 (56%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
Frame = +3
Query: 69 LGLRRAXWXQRXAXGGSXLRPSAXQRXSAXGRPAANTXLGPXRX-HSVRSRGGNXKXRAL 245
+G+ R +R A GG + +R GR ANT L + VR RGGN K RAL
Sbjct: 1 MGISRDSMHKRRATGGKQ-KAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRAL 59
Query: 246 RLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 425
RLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY
Sbjct: 60 RLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYG 119
Query: 426 LPLGRKKGAKLTEAEEA 476
+ +GRKK A + + A
Sbjct: 120 VDIGRKKKAPAAKKDAA 136
Score = 81.4 bits (192), Expect = 8e-16
Identities = 36/72 (50%), Positives = 51/72 (70%)
Frame = +2
Query: 482 QQEEKSKDSKKILGKGNVLXKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELE 661
++ +KS + L K ++ + EQF +GRLLAC++SRPGQCGRADGYIL G ELE
Sbjct: 146 EEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELE 205
Query: 662 FYLRKIKSKRAK 697
FY++K++ K+ K
Sbjct: 206 FYMKKLQRKKGK 217
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 148 bits (358), Expect = 6e-36
Identities = 79/140 (56%), Positives = 95/140 (67%), Gaps = 3/140 (2%)
Frame = +3
Query: 69 LGLRRAXWXQRXAXGGSXLRPSAXQRXSAXGRPAANTXLGPXRX-HSVRSRGGNXKXRAL 245
+G+ R +R A GG + +R GR ANT L + VR RGGN K RAL
Sbjct: 1 MGISRDSMHKRRATGGKQ-KAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRAL 59
Query: 246 RLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 425
RLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY
Sbjct: 60 RLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYG 119
Query: 426 LPLGRKKGAKLT--EAEEAI 479
+ +GRKK A +AE A+
Sbjct: 120 VDIGRKKKAPAAKKDAEHAL 139
Score = 80.2 bits (189), Expect = 2e-15
Identities = 36/72 (50%), Positives = 51/72 (70%)
Frame = +2
Query: 482 QQEEKSKDSKKILGKGNVLXKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELE 661
++ +KS + L K ++ + EQF +GRLLAC++SRPGQCGRADGYIL G ELE
Sbjct: 163 EEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELE 222
Query: 662 FYLRKIKSKRAK 697
FY++K++ K+ K
Sbjct: 223 FYMKKLQRKKGK 234
>10_01_0049 -
668482-669283,669596-670131,670235-670452,670554-670653,
670706-670855
Length = 601
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 497 SKDSKKILGKGNVLXKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFYLRK 676
S D ++ GN V+G + HTG+ AC + G+ A Y G L YL K
Sbjct: 47 SSDEEEGPYTGNGSVDVKGNPASKTHTGKWKACYSILGGEFCGALAYYAVGTNLVSYLTK 106
Query: 677 IKSK 688
++ +
Sbjct: 107 VQGQ 110
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 201 HSVRSRGGNXKXRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 380
H + + GG R +R + C +++ ++V++ + NELV T +N I+V
Sbjct: 377 HGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 436
>10_08_0927 -
21614203-21614219,21615347-21615430,21616529-21616607,
21616986-21616992,21617081-21617151
Length = 85
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 170 SGTPXRRXPLTCGXAQRXPTGGPALXPXS 84
+GTP RR P QR PTGG + S
Sbjct: 2 AGTPGRRPPAAGSAPQRNPTGGRVMDASS 30
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 181 GSVLXVSTPFVHVVXXLSXVRCVWTPVTSLGXRNVQLAKPVSLMLCIMHLTMN 339
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 258 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 401
G FS C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 252 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD-ATPF 398
DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA +VV A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390
>07_03_1206 + 24878301-24879308
Length = 335
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = +1
Query: 10 FLXXPYSGLPS-YFAFLPPLXWVFVGLXGXSAGPPVGXRCAXPXVSGXLRXGVPLQTPGS 186
F P G P+ Y L WV G G PP A G + V +TP S
Sbjct: 132 FRLAPEHGFPAPYDDGKAALRWVLAGAGGALPSPPATVFVAGDSAGGNVAHHVVARTPSS 191
Query: 187 V 189
V
Sbjct: 192 V 192
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 569 FHTGRLLACVASRPGQCGRADGYILXGXELEFYLRKIKSKRAK 697
F+ +LA AS P +C R + + G + LRK S R K
Sbjct: 104 FYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>01_02_0013 + 10162478-10163581
Length = 367
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 229 LSXVRCVWTPVTSLGXRNVQLAKPVSLMLCIMHLTMNWCVQRPL 360
+S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 242 MSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,895
Number of Sequences: 37544
Number of extensions: 283265
Number of successful extensions: 751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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