Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E13
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              188   7e-48
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           50   2e-06
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)                 29   6.3  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  188 bits (457), Expect = 7e-48
 Identities = 89/135 (65%), Positives = 101/135 (74%)
 Frame = +3

Query: 123 LRPSAXQRXSAXGRPAANTXLGPXRXHSVRSRGGNXKXRALRLDTGNFSWGSECSTRKTR 302
           ++P   +R    GRP ANT +G  R H VR+RGGN K RA RLDT NFSWGSE  TRK R
Sbjct: 2   MKPLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKAR 61

Query: 303 IIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAII 482
           IIDVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+
Sbjct: 62  IIDVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEIL 121

Query: 483 NKKRSQKTARKYLAR 527
           NKKRS    RK  AR
Sbjct: 122 NKKRSNHCTRKLEAR 136



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 34/52 (65%), Positives = 42/52 (80%)
 Frame = +2

Query: 542 KVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFYLRKIKSKRAK 697
           KV   + EQF TGRL ACV+SRPGQ GR DGYIL G ELEFY++K+K+++AK
Sbjct: 141 KVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/77 (28%), Positives = 44/77 (57%)
 Frame = +3

Query: 189 PXRXHSVRSRGGNXKXRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 368
           P +    ++ GG+ K +ALR++ G ++  S+    +  I+ V+++ +N E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 369 AIVVVDATPFRQWYESH 419
           +IV VD  PF  W++ +
Sbjct: 97  SIVQVDNKPFEDWFQEY 113


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 288 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 401
           T++ +I D++ N   N  VR +TL+ NA +++D   F+
Sbjct: 18  TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53


>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
          Length = 530

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -1

Query: 418 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 278
           CD+ HC   +  T+T+  + +V    + +   ++   ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,442,350
Number of Sequences: 59808
Number of extensions: 324267
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)