Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_E13
(850 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 222 1e-57
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 222 1e-57
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 222 1e-57
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 222 1e-57
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 165 2e-40
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 87 8e-17
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 31 5.3
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 30 9.2
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 30 9.2
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 30 9.2
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 30 9.2
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 222 bits (543), Expect = 1e-57
Identities = 104/150 (69%), Positives = 118/150 (78%)
Frame = +3
Query: 69 LGLRRAXWXQRXAXGGSXLRPSAXQRXSAXGRPAANTXLGPXRXHSVRSRGGNXKXRALR 248
+G+ R W +R GG +P +R GRPAANT +GP R H+VR RGGN K RALR
Sbjct: 1 MGISRDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALR 59
Query: 249 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 428
LD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY L
Sbjct: 60 LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
Query: 429 PLGRKKGAKLTEAEEAIINKKRSQKTARKY 518
PLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 120 PLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Score = 87.0 bits (206), Expect = 8e-17
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +2
Query: 488 EEKSKDSKKILGKGNVLXKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFY 667
+++SK +K + K+ L EQF G+LLAC+ASRPGQCGRADGY+L G ELEFY
Sbjct: 139 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
Query: 668 LRKIKSKRAK 697
LRKIK+++ K
Sbjct: 199 LRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 222 bits (543), Expect = 1e-57
Identities = 104/150 (69%), Positives = 118/150 (78%)
Frame = +3
Query: 69 LGLRRAXWXQRXAXGGSXLRPSAXQRXSAXGRPAANTXLGPXRXHSVRSRGGNXKXRALR 248
+G+ R W +R GG +P +R GRPAANT +GP R H+VR RGGN K RALR
Sbjct: 1 MGISRDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALR 59
Query: 249 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 428
LD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY L
Sbjct: 60 LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
Query: 429 PLGRKKGAKLTEAEEAIINKKRSQKTARKY 518
PLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 120 PLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Score = 87.0 bits (206), Expect = 8e-17
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +2
Query: 488 EEKSKDSKKILGKGNVLXKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFY 667
+++SK +K + K+ L EQF G+LLAC+ASRPGQCGRADGY+L G ELEFY
Sbjct: 139 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
Query: 668 LRKIKSKRAK 697
LRKIK+++ K
Sbjct: 199 LRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 222 bits (543), Expect = 1e-57
Identities = 104/150 (69%), Positives = 118/150 (78%)
Frame = +3
Query: 69 LGLRRAXWXQRXAXGGSXLRPSAXQRXSAXGRPAANTXLGPXRXHSVRSRGGNXKXRALR 248
+G+ R W +R GG +P +R GRPAANT +GP R H+VR RGGN K RALR
Sbjct: 1 MGISRDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALR 59
Query: 249 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 428
LD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY L
Sbjct: 60 LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
Query: 429 PLGRKKGAKLTEAEEAIINKKRSQKTARKY 518
PLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 120 PLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Score = 87.0 bits (206), Expect = 8e-17
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +2
Query: 488 EEKSKDSKKILGKGNVLXKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFY 667
+++SK +K + K+ L EQF G+LLAC+ASRPGQCGRADGY+L G ELEFY
Sbjct: 139 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
Query: 668 LRKIKSKRAK 697
LRKIK+++ K
Sbjct: 199 LRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 222 bits (543), Expect = 1e-57
Identities = 104/150 (69%), Positives = 118/150 (78%)
Frame = +3
Query: 69 LGLRRAXWXQRXAXGGSXLRPSAXQRXSAXGRPAANTXLGPXRXHSVRSRGGNXKXRALR 248
+G+ R W +R GG +P +R GRPAANT +GP R H+VR RGGN K RALR
Sbjct: 1 MGISRDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALR 59
Query: 249 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 428
LD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY L
Sbjct: 60 LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
Query: 429 PLGRKKGAKLTEAEEAIINKKRSQKTARKY 518
PLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 120 PLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Score = 87.0 bits (206), Expect = 8e-17
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +2
Query: 488 EEKSKDSKKILGKGNVLXKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFY 667
+++SK +K + K+ L EQF G+LLAC+ASRPGQCGRADGY+L G ELEFY
Sbjct: 139 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
Query: 668 LRKIKSKRAK 697
LRKIK+++ K
Sbjct: 199 LRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 165 bits (401), Expect = 2e-40
Identities = 88/150 (58%), Positives = 102/150 (68%)
Frame = +3
Query: 69 LGLRRAXWXQRXAXGGSXLRPSAXQRXSAXGRPAANTXLGPXRXHSVRSRGGNXKXRALR 248
+G+ R W +R GG +P +R GRPAANT +GP R H+VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG-------- 51
Query: 249 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 428
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY L
Sbjct: 52 -----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 99
Query: 429 PLGRKKGAKLTEAEEAIINKKRSQKTARKY 518
PLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 100 PLGRKKGAKLTPEEEEILNKKRSKKIQKKY 129
Score = 87.0 bits (206), Expect = 8e-17
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +2
Query: 488 EEKSKDSKKILGKGNVLXKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFY 667
+++SK +K + K+ L EQF G+LLAC+ASRPGQCGRADGY+L G ELEFY
Sbjct: 119 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 178
Query: 668 LRKIKSKRAK 697
LRKIK+++ K
Sbjct: 179 LRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 87.0 bits (206), Expect = 8e-17
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +2
Query: 488 EEKSKDSKKILGKGNVLXKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFY 667
+++SK +K + K+ L EQF G+LLAC+ASRPGQCGRADGY+L G ELEFY
Sbjct: 11 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 70
Query: 668 LRKIKSKRAK 697
LRKIK+++ K
Sbjct: 71 LRKIKARKGK 80
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 456 LTEAEEAIINKKRSQKTARKY 518
LT EE I+NKKRS+K +KY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKY 21
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 31.1 bits (67), Expect = 5.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 301 RVLRVEHSXPQEKLPVSRRSARXLXXPPRERTE 203
R R E PQ+ + V RS R L PPR RT+
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQ 443
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.3 bits (65), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 435 GRKKGAKLTEAEEAIINKKRSQKTARKYLARATSXL-RLRVLXK 563
GRKK +++TE ++AI+ K+ + R+Y R L R R L +
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALAR 49
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.3 bits (65), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 435 GRKKGAKLTEAEEAIINKKRSQKTARKYLARATSXL-RLRVLXK 563
GRKK +++TE ++AI+ K+ + R+Y R L R R L +
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALAR 49
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.3 bits (65), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 435 GRKKGAKLTEAEEAIINKKRSQKTARKYLARATSXL-RLRVLXK 563
GRKK +++TE ++AI+ K+ + R+Y R L R R L +
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALAR 49
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.3 bits (65), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 435 GRKKGAKLTEAEEAIINKKRSQKTARKYLARATSXL-RLRVLXK 563
GRKK +++TE ++AI+ K+ + R+Y R L R R L +
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALAR 49
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,862,870
Number of Sequences: 237096
Number of extensions: 1623818
Number of successful extensions: 3825
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3825
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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