Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_E13
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 194 7e-50
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.78
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.78
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.78
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.78
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.78
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.78
U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical pr... 30 1.8
U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical pr... 30 1.8
AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa... 29 5.5
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as... 29 5.5
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 9.6
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 9.6
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 194 bits (473), Expect = 7e-50
Identities = 93/153 (60%), Positives = 111/153 (72%)
Frame = +3
Query: 69 LGLRRAXWXQRXAXGGSXLRPSAXQRXSAXGRPAANTXLGPXRXHSVRSRGGNXKXRALR 248
+G+ R W +R G + P +R GRPAANT +G R VR+RGGN K RALR
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHK-KRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALR 59
Query: 249 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 428
LD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY L
Sbjct: 60 LDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYAL 119
Query: 429 PLGRKKGAKLTEAEEAIINKKRSQKTARKYLAR 527
PL RKK AKL+E + AI+NKKRS T +KY R
Sbjct: 120 PLARKKNAKLSEEDNAILNKKRSHHTMKKYTER 152
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/51 (64%), Positives = 43/51 (84%)
Frame = +2
Query: 545 VEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFYLRKIKSKRAK 697
V+ L EQF+TGRLLA ++S PGQ G+A+GYIL G EL+FYLRKI++K+AK
Sbjct: 158 VDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 240 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 344
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 240 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 344
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 240 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 344
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 240 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 344
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 240 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 344
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 240 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 344
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical
protein F11D5.3b protein.
Length = 767
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 471 EAIINKKRSQKTARKYLARATSXLRLRVLXKSNSTRGVC 587
E I ++ R++L RA R+R++ SNSTR VC
Sbjct: 105 ETIPANNDTEHAIRRHLDRAIIARRIRIVPVSNSTRTVC 143
>U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical
protein F11D5.3a protein.
Length = 797
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 471 EAIINKKRSQKTARKYLARATSXLRLRVLXKSNSTRGVC 587
E I ++ R++L RA R+R++ SNSTR VC
Sbjct: 135 ETIPANNDTEHAIRRHLDRAIIARRIRIVPVSNSTRTVC 173
>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
protein kinase protein.
Length = 1425
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Frame = +3
Query: 330 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG------RKKGAKLTEAEEAIINKK 491
++++ + T ++ V D TPF YE L G R + K E A KK
Sbjct: 2 SDDVNSSATSTSSSTVHFDDTPFEDVYEIETELGSGQFAVVRRVRDRKTGEKYAAKFIKK 61
Query: 492 RSQKTARKYLARATSXLRLRVLXKSNSTRGV 584
R T+R+ + R +RVL K V
Sbjct: 62 RRYATSRRGVTRQNIEREVRVLQKIRGNSNV 92
>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
(death-associated protein)kinase homolog protein 1
protein.
Length = 1425
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Frame = +3
Query: 330 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG------RKKGAKLTEAEEAIINKK 491
++++ + T ++ V D TPF YE L G R + K E A KK
Sbjct: 2 SDDVNSSATSTSSSTVHFDDTPFEDVYEIETELGSGQFAVVRRVRDRKTGEKYAAKFIKK 61
Query: 492 RSQKTARKYLARATSXLRLRVLXKSNSTRGV 584
R T+R+ + R +RVL K V
Sbjct: 62 RRYATSRRGVTRQNIEREVRVLQKIRGNSNV 92
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 343 TNSLLDALYTTSMIRVLRV 287
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 282 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 404
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,241,307
Number of Sequences: 27780
Number of extensions: 228181
Number of successful extensions: 610
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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