Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E13
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   151   8e-37
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   142   3e-34
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   3.9  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  151 bits (365), Expect = 8e-37
 Identities = 85/163 (52%), Positives = 102/163 (62%), Gaps = 7/163 (4%)
 Frame = +3

Query: 69  LGLRRAXWXQRXAXGGSXLRPSAXQRXSAXGRPAANTXLGPXRX-HSVRSRGGNXKXRAL 245
           +G+ R    +R A GG   +    +R    GR  ANT L   +    +R RGGN K RAL
Sbjct: 1   MGISRDSIHKRRATGGKQ-KQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRAL 59

Query: 246 RLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 425
           RLDTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY 
Sbjct: 60  RLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYG 119

Query: 426 LPLGR-KKGAKLT-----EAEEAIINKKRSQKTARKYLARATS 536
           + LGR KK A  T     E EEA +      K +   L +  S
Sbjct: 120 VELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIAS 162



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 32/51 (62%), Positives = 43/51 (84%)
 Frame = +2

Query: 545 VEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFYLRKIKSKRAK 697
           ++  + +QF +GRLLAC++SRPGQCGRADGYIL G ELEFY++KI+ K+ K
Sbjct: 169 LDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  142 bits (344), Expect = 3e-34
 Identities = 79/150 (52%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
 Frame = +3

Query: 69  LGLRRAXWXQRXAXGGSXLRPSAXQRXSAXGRPAANTXLGPXRX-HSVRSRGGNXKXRAL 245
           +G+ R    +R A GG   +    +R    GR  ANT L   +    +R RGGN K RAL
Sbjct: 1   MGISRDSIHKRRATGGKQ-KMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRAL 59

Query: 246 RLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 425
           RLDTGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY 
Sbjct: 60  RLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYG 119

Query: 426 LPLGRKKGAKLTEAEEAIINKKRSQKTARK 515
           + +GRKK  +    EE     K+S    RK
Sbjct: 120 VDIGRKKKGEAVTTEEV----KKSNHVQRK 145



 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 34/51 (66%), Positives = 43/51 (84%)
 Frame = +2

Query: 545 VEGALXEQFHTGRLLACVASRPGQCGRADGYILXGXELEFYLRKIKSKRAK 697
           ++  L EQF +GRLLAC+ASRPGQCGRADGYIL G ELEFY++K++ K+ K
Sbjct: 155 LDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 339 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 467
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,423,765
Number of Sequences: 28952
Number of extensions: 206952
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)