Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E10
         (873 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 434 HNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGG 532
           H+   D+S+      N+PSA  N  NFN    G
Sbjct: 115 HDEIPDISSTRGNNNNTPSATNNNTNFNNNSNG 147


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 434 HNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGG 532
           H+   D+S+      N+PSA  N  NFN    G
Sbjct: 63  HDEIPDISSTRGNNNNTPSATNNNTNFNNNSNG 95


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 434 HNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGG 532
           H+   D+S+      N+PSA  N  NFN    G
Sbjct: 246 HDEIPDISSTRGNNNNTPSATNNNTNFNNNSNG 278


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 322 EAALSLWRSLKSADPMALSTF 260
           E  L+ W+  KSA+ +A+  F
Sbjct: 372 EVNLTCWQDTKSANKIAMKLF 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,377
Number of Sequences: 336
Number of extensions: 2816
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)