Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E10
         (873 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 32   0.70 
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)                    29   3.8  
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)                   29   5.0  

>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 609

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 343 NVNGHGLSLTGTRIPGFGEQLGVAGQGQLVPQ*QPRPERQGVRDQELSQRHPQRAQ 510
           N  GHG+   G  I    +++  AGQG  +P  +   E Q V+  E++    ++ Q
Sbjct: 461 NFAGHGIKSAGQGIKTSEQRINFAGQGMKLPGHEINSEDQDVKSAEMAVEPAEQGQ 516


>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
          Length = 822

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 159 HVPTRARRQAGSFTVNS---DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHK 308
           HVP +     G +  NS     T G+ + +PL  ++K V+  +G    ND HK
Sbjct: 526 HVP-KVGSHGGVYFWNSFRNKDTDGSLIVLPLKDHEKRVIGLLGVDTLNDSHK 577


>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
          Length = 1198

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 391  FGEQLG-VAGQGQLVPQ*QPRPERQGVRDQELSQRHPQR 504
            F E  G   G G  VPQ  P PE+  +R  E  +R P+R
Sbjct: 1155 FNEMSGPTQGDGNRVPQPCPTPEQPTLRRSERVRRRPRR 1193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,954,161
Number of Sequences: 59808
Number of extensions: 387961
Number of successful extensions: 900
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)