Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E08
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    28   2.2  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    27   3.8  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   6.7  

>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 290 LYTCILCTDTRSSEVFTLINEFICFYCA 207
           +Y C  C D   +  F   N  IC YCA
Sbjct: 347 VYPCDECHDADQNHTFEHANRIICGYCA 374


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 304 MCDSG-CIRVYCVRILAAARCLH 239
           +CD G C+ VYC + LA   C++
Sbjct: 196 VCDCGYCLHVYCCKHLAHVNCIN 218


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 305 NVRQWLYTCILCTDTRSSEVFTLINEFIC 219
           N  + L +CIL T+ R+S +  +I  F C
Sbjct: 908 NTTKALRSCILSTEERASNMKEIIQRFAC 936


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,641
Number of Sequences: 5004
Number of extensions: 14835
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)