Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E07
         (870 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1H3G2 Cluster: Zinc/iron permease; n=1; Methylobacillu...    35   2.3  
UniRef50_Q21354 Cluster: Putative uncharacterized protein; n=2; ...    34   4.1  
UniRef50_A4FH05 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  

>UniRef50_Q1H3G2 Cluster: Zinc/iron permease; n=1; Methylobacillus
           flagellatus KT|Rep: Zinc/iron permease - Methylobacillus
           flagellatus (strain KT / ATCC 51484 / DSM 6875)
          Length = 251

 Score = 35.1 bits (77), Expect = 2.3
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
 Frame = -1

Query: 588 HHFLDN---ATXLQTDSSIPWSVSVFLLLWRQPNSSSP*QLF--SRFADTNFVVLR--SS 430
           H+F+D    A    TD ++ W+++V ++L   P   S   +   +  + +  ++L   S 
Sbjct: 116 HNFVDGMLIAAAFLTDPALGWTMAVTVMLHEIPQEVSDFMVLLNAGLSKSRALLLNALSG 175

Query: 429 PAWVLSGSFAWFSTSAMRTAVXNFMQISLQRFAQAPHVVQXPELLXGRXPGNG 271
            A VL G   W S   M+TA+   + ++   F         PEL   R   +G
Sbjct: 176 AAMVLGGFLGWLSLDTMQTAIPVILIVAASSFIYIAVADLVPELQRKRSLRDG 228


>UniRef50_Q21354 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 215

 Score = 34.3 bits (75), Expect = 4.1
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 396 TRRMNPTAPMLDYSEEPRNSCPRTG*TIATXTKNLVDAKEEEKRRLTKEWKNQFEGQSRY 575
           T  M+P  P+++  EEP+   P              +AKEE+K    KE K +   +   
Sbjct: 56  TANMHPAEPVVEKKEEPKEKVPEKKEEEKKDATKKEEAKEEKKEEERKEEKKEESKEGEK 115

Query: 576 RESG 587
           + SG
Sbjct: 116 KNSG 119


>UniRef50_A4FH05 Cluster: Putative uncharacterized protein; n=1;
           Saccharopolyspora erythraea NRRL 2338|Rep: Putative
           uncharacterized protein - Saccharopolyspora erythraea
           (strain NRRL 23338)
          Length = 212

 Score = 33.1 bits (72), Expect = 9.4
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -3

Query: 508 ASTKFFVXVAIVQP--VRGHEFRGSSE*SSMGAVGFIRLVLHVCDADSGX*FHAN*PAAL 335
           AS    V +    P  VR H   G+S+     A+G +  ++HV D   G  F  N P  L
Sbjct: 105 ASAALLVAMVRTTPPQVRAHHVFGASDPEGFAAMGVVETLVHVHDLAEGLGFAWNPPGDL 164

Query: 334 CS 329
           C+
Sbjct: 165 CA 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,353,699
Number of Sequences: 1657284
Number of extensions: 6821232
Number of successful extensions: 16959
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16957
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)