Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E07
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    28   2.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   4.6  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   8.0  

>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 489 TKNLVDAKEEEKRRLTKEWKNQFEGQSRYRE 581
           T NLVD  E+  +R  + W  Q     RYRE
Sbjct: 229 TPNLVDKLEDSTKRYWRAWIQQCVYTGRYRE 259


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 405  MNPTAPMLDYSEEPRNSCPRTG*TIATXTKNLVDAKEEEKRRLTKEWKNQFEGQSRYRES 584
            +NP+AP     E   +S P       T  KNLV+ K  EKR   +   N+ + + R R++
Sbjct: 1339 LNPSAP-----EFVPDSTPSDAVASETDNKNLVENKAVEKRVEARSSANERKQEERRRKT 1393


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 369 PLSASQTWRTRRMNPTAPMLDYSEEPRNSCPRTG*TIATXTKNLVDAKEEEK 524
           PLS   T +   +N  + +LD+S    N  P+   +      N V  K++ K
Sbjct: 182 PLSNFSTTKISSINVPSDILDFSNLSSNEIPKDYSSSTALLNNTVAVKQDHK 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,009
Number of Sequences: 5004
Number of extensions: 27857
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)