Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E07
         (870 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)                      30   2.8  
SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_34260| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_25687| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
          Length = 406

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = -1

Query: 579 LDNATXLQTDSSIPWSVSVFLLLWR--QPNSSSP*QLFSRFADTNFVVLRSSPAWVLS 412
           L + + L+  S+ P ++S   LL    QP+S++P Q+ S    ++ V+ R+ PA+V S
Sbjct: 220 LPSTSSLKASSNSPSALSTTSLLSFSIQPSSATPIQVSSSVTTSDAVICRARPAFVYS 277


>SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 465 FADTNFVVLRSSPAWVLSGSFAWFSTSAMRTAVXNFMQISLQRF 334
           FA T  + L S   WV+S  F +F    +   + NF++  L  F
Sbjct: 129 FASTGAIELLSEQLWVISQVFLFFRLKVVIEGIANFVKCVLTVF 172


>SB_34260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/40 (47%), Positives = 23/40 (57%)
 Frame = -3

Query: 601 SVIRAPLSR*RDXPSN*FFHSLVSLRFSSSLASTKFFVXV 482
           ++IRAP  R    PS    HSLV   FSSS+ S  FF+ V
Sbjct: 10  AIIRAPCVRGL-VPSFARSHSLVQNVFSSSIISWSFFIGV 48


>SB_25687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 304 RXLDHVXSLSKALQANLHEIXNRCPHRRRGEPGE*TRQHPCW-TTPK 441
           R L  V  L+ A+Q    E    C H   G  G+   Q+  W TTP+
Sbjct: 201 RPLSEVLQLTGAIQLTEWEFSEACHHYTSGRVGQHLEQNEGWITTPE 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,770,401
Number of Sequences: 59808
Number of extensions: 224418
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)