Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E07
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical
           protein K08F4.5 protein.
          Length = 215

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 396 TRRMNPTAPMLDYSEEPRNSCPRTG*TIATXTKNLVDAKEEEKRRLTKEWKNQFEGQSRY 575
           T  M+P  P+++  EEP+   P              +AKEE+K    KE K +   +   
Sbjct: 56  TANMHPAEPVVEKKEEPKEKVPEKKEEEKKDATKKEEAKEEKKEEERKEEKKEESKEGEK 115

Query: 576 RESG 587
           + SG
Sbjct: 116 KNSG 119


>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 352 LHEIXNRCPHRRRGEPGE*TRQHPCWTTPKNH 447
           + ++ +  PHRR GEP + T +   W    NH
Sbjct: 638 VRDVPHGLPHRRDGEPKDRTSKDATWLQELNH 669


>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 352 LHEIXNRCPHRRRGEPGE*TRQHPCWTTPKNH 447
           + ++ +  PHRR GEP + T +   W    NH
Sbjct: 638 VRDVPHGLPHRRDGEPKDRTSKDATWLQELNH 669


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,215,613
Number of Sequences: 27780
Number of extensions: 164881
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)