Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E06
         (865 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    40   0.061
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    37   0.57 
UniRef50_A5I0E6 Cluster: Propanediol utilization protein; n=4; C...    35   3.1  
UniRef50_Q65UU3 Cluster: Putative uncharacterized protein; n=2; ...    33   9.3  
UniRef50_O25547 Cluster: Putative uncharacterized protein; n=1; ...    33   9.3  
UniRef50_Q7P5T9 Cluster: Putative uncharacterized protein FNV086...    33   9.3  
UniRef50_Q180D4 Cluster: Putative uncharacterized protein; n=2; ...    33   9.3  

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.3 bits (90), Expect = 0.061
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +3

Query: 717 SALMNRPXPRXKRFAYWALFRFL 785
           +ALMNRP    +RFAYWALFRFL
Sbjct: 25  AALMNRPTRGERRFAYWALFRFL 47


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 37.1 bits (82), Expect = 0.57
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +1

Query: 520 DPXMIXYIDEXGQTTTRMQ 576
           DP MI YIDE GQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A5I0E6 Cluster: Propanediol utilization protein; n=4;
           Clostridium botulinum|Rep: Propanediol utilization
           protein - Clostridium botulinum A str. ATCC 3502
          Length = 279

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +2

Query: 167 KEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMV-DSFN--EFYKN 316
           KE NSI  L    K++IE+   K  S ++ E++K+NF  +  D FN  E YKN
Sbjct: 174 KEMNSIEDLIPDLKESIEKRNIKNISRISEESIKRNFHRLTYDYFNTVEKYKN 226


>UniRef50_Q65UU3 Cluster: Putative uncharacterized protein; n=2;
           Pasteurellaceae|Rep: Putative uncharacterized protein -
           Mannheimia succiniciproducens (strain MBEL55E)
          Length = 449

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -1

Query: 400 LLHSIYLGLCT*ILKNYF--SGFRCFRGLQIFIKFVEAVYHRAKVFLNSL 257
           LL  I+LGLC   + N F  S F  F G+ +F+ F+E + +  + F+NSL
Sbjct: 10  LLIIIFLGLCIVTIDNIFIVSDFVLF-GIFLFLLFLEVIINPKRNFINSL 58


>UniRef50_O25547 Cluster: Putative uncharacterized protein; n=1;
           Helicobacter pylori|Rep: Putative uncharacterized
           protein - Helicobacter pylori (Campylobacter pylori)
          Length = 140

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +2

Query: 140 HAFVKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 319
           H +  +D  K    +  L E   +  EEL    ES    +   + +   + +F ++YK++
Sbjct: 69  HTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDI 128

Query: 320 K 322
           K
Sbjct: 129 K 129


>UniRef50_Q7P5T9 Cluster: Putative uncharacterized protein FNV0869;
           n=1; Fusobacterium nucleatum subsp. vincentii ATCC
           49256|Rep: Putative uncharacterized protein FNV0869 -
           Fusobacterium nucleatum subsp. vincentii ATCC 49256
          Length = 129

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 146 FVKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKP 325
           F+  + P   NS   +  + KKT ++    + S +  + +K +    + + N+F+K LK 
Sbjct: 3   FIAGNTPSSKNSKRIITITNKKTGKKTTRLINSEVTEKYIKNSKADWLINKNKFFKMLKD 62

Query: 326 AEAPKA*EVIF 358
            E P   E+ F
Sbjct: 63  KEKPYKVELYF 73


>UniRef50_Q180D4 Cluster: Putative uncharacterized protein; n=2;
           Clostridium difficile|Rep: Putative uncharacterized
           protein - Clostridium difficile (strain 630)
          Length = 349

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +2

Query: 134 NVHAFVKRDAPKED---NSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNE 304
           ++  ++KR+  K D   NS N LAE   K ++ L+E VE        K+N    ++ +NE
Sbjct: 241 SIAEYLKRERDKNDTKVNSENELAEEECKVLDTLKENVE--------KENIDACIEFWNE 292

Query: 305 FYKN 316
           + KN
Sbjct: 293 YKKN 296


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,668,844
Number of Sequences: 1657284
Number of extensions: 9830579
Number of successful extensions: 24754
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24745
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)