Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E05
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    32   0.093
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.21 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo...    27   3.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   4.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   4.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   4.6  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.1  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    26   8.1  
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    26   8.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   8.1  

>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = -3

Query: 313 IPIAVSD--EIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSIDEPRFRSGRSGQNVNV 143
           IP+A++D  E+V+   DD + ++ +      N R+    G+S +EPR R   SG+ VNV
Sbjct: 238 IPLAMNDLFEMVENNSDDDTFQIRISYLEIYNERIRDLIGNSDEEPRIRENASGE-VNV 295


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 26/98 (26%), Positives = 46/98 (46%)
 Frame = +3

Query: 243 SRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSRS 422
           S ++   +SS   S  SS + I    SSP++        SS ++S FS        +S S
Sbjct: 322 SSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFS-----STVSSSS 376

Query: 423 STRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGS 536
           ST  + L S+S       ++ SH++  ++  + +S+ S
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS 414



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 28/117 (23%), Positives = 53/117 (45%)
 Frame = +3

Query: 186 SSMLSPLPITTRLFL*FCCSRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSS 365
           SS+ S  P+T+  F     S ++   +S    S+ SS T      ++PT+  S  +  SS
Sbjct: 162 SSLSSSDPLTSSTF----SSLSSSTSSSQPSVSSTSSSTFSS---AAPTSTSSSYLSSSS 214

Query: 366 NTTSLFSLDRCYPRATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGS 536
             +S  S         + SS   + +PS S    +  ++ S ++  +T ++ +S+ S
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSS 271


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
 Frame = +3

Query: 243 SRNNRVEASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRC-YPRATSR 419
           S + +   SS +PS+  S T +    S+     S     S N+T+  S         +S 
Sbjct: 271 SSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSA 330

Query: 420 SSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGS 536
           +ST  T   S  +      T  S ++ P T    T+A S
Sbjct: 331 NSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATS 369


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 285 TISSETAIGMF*SSPTNCGSGRVRKSSNTTSLF-SLDRCYPRATSRSSTRETILPSNSVL 461
           TISS T +     + TNC       +++T+ L+ S     P +TS SST+ +   +  + 
Sbjct: 574 TISSSTPVTSTPVTTTNC-------TTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPIT 626

Query: 462 RQTQITTESHTAMPTTRAARTS 527
             +     S T++P T   RTS
Sbjct: 627 GTSTSKVTSSTSIPLTSTNRTS 648


>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
           Csl4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 181

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -3

Query: 682 LVSVRVSAI----ISINAMVVXTIRTRSKFQVLVPTNTVDLEVNPVVLPERNQLPADVLA 515
           +V  RVS I     ++N  VV  + T+ +FQ ++    +       V  + +  P D++ 
Sbjct: 60  IVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFRPGDIVR 119

Query: 514 ALVVGI 497
           ALV+ +
Sbjct: 120 ALVISL 125


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 159 PLRPERKRGSSMLSPLPI 212
           PL+P+R RG   L PLP+
Sbjct: 144 PLKPKRGRGRPRLHPLPV 161


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 276 IPSTISSETAIGMF*SSPTN----CGSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETIL 443
           +P+T+S+  ++  F SSP+      G+  +  SSN  +  +    Y  +   ++T  T  
Sbjct: 518 VPTTVSTSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQVTYTTSPEETTTTMTTT 577

Query: 444 PSNSVLRQTQITTESHTA 497
             +S   +T I+T S T+
Sbjct: 578 TCSSRPEET-ISTVSTTS 594


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +2

Query: 395 VLSESNVKIINKRDNLAIKLGAAADSDNDRIAYGDANDKSSENV 526
           +LS++  +I+N   +  +K G A+D D++    GD   +SSE++
Sbjct: 755 ILSDAQFRILNNLASTMLKDGKASDDDDN----GDWRPESSESL 794


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +3

Query: 273 RIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETILPS- 449
           R  ST SS ++  +  S  +   +     SS +TS  S       A+  S++ E I  S 
Sbjct: 50  RRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSS-GTSVITASDVSASNEIISSST 108

Query: 450 -NSVLRQTQITTESHTAMPTT 509
            NS+ +Q  + TE  T  PTT
Sbjct: 109 NNSIHQQVSVVTEYVTIQPTT 129


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 264 ASSRIPSTISSETAIGMF*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSR--SSTRET 437
           +SS  PST SS ++     SS ++  S    KSS+ +S  +      R TS   SS R T
Sbjct: 136 SSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSH---RTTSHKSSSYRPT 192

Query: 438 ILPSNSV 458
           + P  ++
Sbjct: 193 VFPYTTI 199


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 509 KSSENVSWKLIPLWENNRVYFKIYSVRR--HQYLKLGTGTDGXXDHSVYGD 655
           K   ++ +K IPL++NN    KI +V R   + + +GT  +G    S   D
Sbjct: 249 KECVDIFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNGANSSSTRQD 299


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 230 LILLLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVK 367
           +IL LEK  +  +++  VNN I   +R++   A   +I +G+ IVK
Sbjct: 45  VILALEKVVTSKLLKPRVNNRIGSVDRHI-GIATTGFIPDGQHIVK 89


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +3

Query: 399 YPRATSRSSTRETILPSNSVLRQTQIT-TESHTAMPTTRAARTSAGS 536
           YP + +R+ T E ++P+   + +T+I+ +E +T+  T  A  T++G+
Sbjct: 355 YPASGTRTGTVEVVIPTAGTVTETEISGSELYTS--TFPANGTTSGT 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,821
Number of Sequences: 5004
Number of extensions: 57622
Number of successful extensions: 191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)