Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_E05
(873 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8) 31 1.2
SB_35309| Best HMM Match : VWA (HMM E-Value=9.70007e-41) 30 2.1
SB_55895| Best HMM Match : ig (HMM E-Value=2.2e-05) 30 2.8
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 29 3.8
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_11461| Best HMM Match : NHL (HMM E-Value=0) 29 5.0
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3) 29 6.6
SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2) 28 8.7
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 28 8.7
>SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8)
Length = 232
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 SPTNCGSGRVRKSSNTTSLFSLDRCYPRATSRS-STRETILPSNSVLRQTQITTESHTAM 500
SPT+ ++ SS+T ++ P + S++ STRET+ ++ ++ + TT SH M
Sbjct: 109 SPTSHSHESIKTSSSTKNI-------PASKSQTLSTRETV--ASEIMPTSTRTTTSHVVM 159
Query: 501 PTTR 512
PTT+
Sbjct: 160 PTTQ 163
>SB_35309| Best HMM Match : VWA (HMM E-Value=9.70007e-41)
Length = 409
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 312 FLLPSLMRLLTVSSMMLPLDCFSSSRIR 229
F +P+++R+ S + L CF SSRIR
Sbjct: 354 FRVPAMIRICVTSELKFNLPCFQSSRIR 381
>SB_55895| Best HMM Match : ig (HMM E-Value=2.2e-05)
Length = 420
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -3
Query: 295 DEIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSIDEPRFRSGRSGQNVNVQVNKTGAGR 116
+E + ++ A+ + Q +S +G GDS++ P RS ++G N + V+ GR
Sbjct: 164 EETGEQVVSRAAINVIAFQAQGSSSSREVGQGDSLNLPNVRSNQTG-NYTITVSNQYGGR 222
Query: 115 QHA 107
A
Sbjct: 223 ASA 225
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 333 NCGSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETILPSNSVLRQTQITTESHTAMPT 506
+C +G+ + T ++++ T+ ET+ N+ RQ IT +HT PT
Sbjct: 28 SCSAGKYNMETVTAVKYNMET----VTAVKYNMETVTAENTTWRQLHITAVTHTVTPT 81
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 29.5 bits (63), Expect = 3.8
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +3
Query: 273 RIPSTISSETAIGMF*SSPTNCGSGRVRKS-SNTTSLFSLDRCYPRATSRSSTRETILPS 449
R P SS + SS ++ GS +S S+T S S R R+ SRS +
Sbjct: 189 RSPRRSSSSYSSRSRSSSSSSSGSSHSSRSQSHTPSSGSGSRNSSRSASRSQSHSVSRSR 248
Query: 450 NSVLRQTQITTESHTAMPTTRAARTSAGS 536
+ L Q++ ++SH+A + +R+ + S
Sbjct: 249 SKSLSQSRSRSQSHSASRSVSRSRSRSRS 277
>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
Length = 819
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 178 FRSGRSGQNVNVQVNKTGAGRQHAGREKHQKLHLDSLGS*HPRYVSKS*EFPIVNGXET 2
+R RS +V + G RQ GR+ H+K +GS R + +P+V G T
Sbjct: 683 YRYSRSRSDVRTHILLLG-NRQDIGRDSHEKQPQHIVGSLWERRIRGGLCYPLVRGDRT 740
>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 419 IINKRDNLAIKLGAAADSDNDRIAYGDA-NDKSSENVSW 532
+INK DN +IK AAD+ D++ + D+ N+ + +W
Sbjct: 336 VINKGDNNSIKYLLAADTKADKVTWLDSLNEALKDYKAW 374
>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
Length = 312
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 402 PRATSRSSTRETILPSNSVLRQTQITTESHTAMPTT 509
P A + SST T P+ V Q +TE+ T PTT
Sbjct: 79 PTAKTTSSTSSTSKPTEDVGTSPQPSTENETHTPTT 114
>SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)
Length = 376
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 342 SGRVRKSSNT-TSLFSLDRCYPRATSRSSTRETILPSNSVLRQTQITT---ESHTAMPTT 509
S VRKS+ TS S R YPR S+T T + VLRQ + T + H+ T
Sbjct: 184 SALVRKSTRQPTSRRSASR-YPRKNKHSTTDITEISVTDVLRQQECVTHPLKKHSTTDIT 242
Query: 510 RAARTSA 530
+ T A
Sbjct: 243 EISVTDA 249
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -3
Query: 709 SSLAGFRYQL-VSVRVSAIISINAMVVXTIRTRSKFQVLVPTNTVDLEVNPVVLPERNQL 533
S G Y L S R + ++ ++ TI TRS + + + V PE +L
Sbjct: 379 SEAVGVSYPLETSEREKEFVDVHGRIIKTIITRSVIRTWIVFDEKGNHVQDTNAPESEEL 438
Query: 532 PAD 524
P D
Sbjct: 439 PTD 441
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,655,844
Number of Sequences: 59808
Number of extensions: 451744
Number of successful extensions: 1492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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