Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E04
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                           91   1e-18
12_01_0323 - 2459854-2460306                                           90   2e-18
11_01_0317 - 2365493-2365786,2365825-2365953                           90   2e-18
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     28   8.4  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 39/59 (66%), Positives = 52/59 (88%)
 Frame = +1

Query: 295 GKVMXVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGR 471
           GKV+ VYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILDR+A+GR
Sbjct: 67  GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR 125



 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 39/63 (61%), Positives = 46/63 (73%)
 Frame = +3

Query: 93  MKFNKQVTXXXXXXXXXXFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 272
           MK N +VT          F+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 273 HYK 281
            YK
Sbjct: 61  SYK 63


>12_01_0323 - 2459854-2460306
          Length = 150

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 39/59 (66%), Positives = 51/59 (86%)
 Frame = +1

Query: 295 GKVMXVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGR 471
           GKV+ VYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILDR+A GR
Sbjct: 67  GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR 125



 Score = 79.0 bits (186), Expect = 5e-15
 Identities = 39/63 (61%), Positives = 46/63 (73%)
 Frame = +3

Query: 93  MKFNKQVTXXXXXXXXXXFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 272
           MK N +VT          F+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 273 HYK 281
            YK
Sbjct: 61  SYK 63


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 39/59 (66%), Positives = 51/59 (86%)
 Frame = +1

Query: 295 GKVMXVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGR 471
           GKV+ VYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILDR+A GR
Sbjct: 54  GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR 112



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +3

Query: 93  MKFNKQVTXXXXXXXXXXFSAPSHIRRVLMSSPLSKELRQKFNV--KSMPIRKDDEVQVV 266
           MK N +VT          F+APS +RRVLMS+ LS ELR K+NV   S   R+   VQV 
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVVRGSYKGREGKVVQVY 60

Query: 267 RGHYKV 284
           R  + +
Sbjct: 61  RRRWVI 66


>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 338 MYTTNFLRYTXITLPTCXHFVVSTYNLNFIV 246
           +Y+T FLR +   LPTC    +  Y+L  IV
Sbjct: 47  IYSTGFLRLSFRRLPTCGGMFLYRYDLTRIV 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,202,124
Number of Sequences: 37544
Number of extensions: 283038
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)