Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E04
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...    86   3e-17
At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)            85   8e-17
At5g36905.1 68418.m04423 RNase H domain-containing protein low s...    32   0.57 

>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/59 (64%), Positives = 50/59 (84%)
 Frame = +1

Query: 295 GKVMXVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGR 471
           GKV+ VYR+K+V++IERI REK NG T  VGI PSK VI KL+++KDRK++L+R+AKGR
Sbjct: 67  GKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGR 125



 Score = 81.0 bits (191), Expect = 9e-16
 Identities = 39/63 (61%), Positives = 47/63 (74%)
 Frame = +3

Query: 93  MKFNKQVTXXXXXXXXXXFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 272
           MK+N +VT          F+A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 273 HYK 281
            YK
Sbjct: 61  TYK 63


>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 41/63 (65%), Positives = 48/63 (76%)
 Frame = +3

Query: 93  MKFNKQVTXXXXXXXXXXFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 272
           MKFN +V+          F+APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 273 HYK 281
            +K
Sbjct: 61  TFK 63



 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 34/59 (57%), Positives = 49/59 (83%)
 Frame = +1

Query: 295 GKVMXVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGR 471
           GKVM VYR+K+V++IERI REK NG+T  VG++ S  +I KL+++KDRK++L+R+A GR
Sbjct: 67  GKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGR 125


>At5g36905.1 68418.m04423 RNase H domain-containing protein low
           similarity to reverse transcriptase [Arabidopsis
           thaliana] GI:976278; contains Pfam profile PF00075:
           RNase H
          Length = 633

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = +1

Query: 316 RKKFVVYIERIQREKANGATAYVGIHPSKCVI---VKLKMNKDRKAILDR--RAKGRLGC 480
           RK  ++  +R+   KA G        P    +   V  ++ KDR ++  R  R+K R+G 
Sbjct: 82  RKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRLMKDRTSLWARVLRSKYRIGG 141

Query: 481 TWAKTRVNTPRKLPQXWRPLK 543
               T +NT R     WR +K
Sbjct: 142 LRDTTWINTKRNASSTWRSIK 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,467,686
Number of Sequences: 28952
Number of extensions: 235129
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)