Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E03
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...    85   2e-17
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...    85   2e-17
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    39   8e-04
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    28   1.6  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   8.4  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
 Frame = +3

Query: 144 EQIINCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVM 311
           + I+NCADN+G+K     SV     RL+++    C     G  +    K+    LRKK+M
Sbjct: 22  QAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASC-----GDMVLATVKKGKPDLRKKIM 76

Query: 312 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
           PA+V+RQRK +RR+DGV++YFEDNAGVIVN KG  +G
Sbjct: 77  PAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKG 113



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +1

Query: 406 RGEMKGSAITGAVAKECADLWPR 474
           +GEMKGSAITG VAKECADLWPR
Sbjct: 108 KGEMKGSAITGPVAKECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
 Frame = +3

Query: 144 EQIINCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVM 311
           + I+NCADN+G+K     SV     RL+++    C     G  +    K+    LRKK+M
Sbjct: 22  QAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASC-----GDMVLATVKKGKPDLRKKIM 76

Query: 312 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
           PA+V+RQRK +RR+DGV++YFEDNAGVIVN KG  +G
Sbjct: 77  PAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKG 113



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +1

Query: 406 RGEMKGSAITGAVAKECADLWPR 474
           +GEMKGSAITG VAKECADLWPR
Sbjct: 108 KGEMKGSAITGPVAKECADLWPR 130


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +3

Query: 150 IINCADNTGSKESVCDRCPRLSKVA*TDCRRPVPGX*LWPQSK--RVNLKLRKKVMPAVV 323
           I+   DN+G+  + C R  R  K A       V        S     N   R  +  A++
Sbjct: 7   ILKVIDNSGATLAECIRVVRAGKFASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAII 66

Query: 324 IRQRKPFRRRDGVFIYFEDNAGVIVNNK 407
           +R + P RR DG ++ F+DNA V+VN +
Sbjct: 67  VRTKSPVRRPDGRYVRFDDNACVLVNKE 94


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 71  KMSKXGRGGSSVERNSRISLGLPVGADNQLRR--QHREQRI 187
           K+   GRGG ++ER+ R+ + + +  +  L R  Q R+QR+
Sbjct: 186 KLITMGRGGRAIERSPRVRVTVVLRDERALLRDLQRRQQRL 226


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/59 (22%), Positives = 29/59 (49%)
 Frame = -3

Query: 476 IRGHRSAHSLATAPVMAEPFISPLVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYLF 300
           +R  R  + ++   ++  P    L   Y  + +++   Y +  S+  PL DDHC+++ +
Sbjct: 89  LRHFRHENIISILDILPPPSYQELEDVYIVQELMETDLYRVIRSQ--PLSDDHCQYFTY 145


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 109 AKFPYLPGSPSGSR*STAPTTQGAKNLYVIAVQGYQRSP 225
           A+ PY P SP+ S  S+ P+T   +  + I     Q++P
Sbjct: 242 AEMPYFPISPAISCASSCPSTPDEQKNFFIVGNAPQQTP 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,648
Number of Sequences: 5004
Number of extensions: 44954
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)