Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_E03
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 84 2e-16
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 84 2e-16
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 84 2e-16
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 36 0.058
01_01_0731 - 5694273-5694584 30 2.9
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 28 8.8
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 83.8 bits (198), Expect = 2e-16
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
Frame = +3
Query: 153 INCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVMPAV 320
+NCADNTG+K SV RL+++ + C G + K+ LRKKVMPAV
Sbjct: 26 VNCADNTGAKNLYIISVKGIKGRLNRLP-SAC----VGDMVMATVKKGKPDLRKKVMPAV 80
Query: 321 VIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
++RQRKP+RR+DGV++YFEDNAGVIVN KG +G
Sbjct: 81 IVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKG 114
Score = 66.9 bits (156), Expect = 2e-11
Identities = 39/77 (50%), Positives = 51/77 (66%)
Frame = +2
Query: 74 MSKXGRGGSSVERNSRISLGLPVGADNQLRRQHREQRICM*SLSKAIKGRLNRLPAAGSG 253
MSK GRGGS+ + R+SLGLPV A + + + S+ K IKGRLNRLP+A G
Sbjct: 1 MSKRGRGGSAGNK-FRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVG 58
Query: 254 XMIVATVKKGKPETPEK 304
M++ATVKKGKP+ +K
Sbjct: 59 DMVMATVKKGKPDLRKK 75
Score = 50.4 bits (115), Expect = 2e-06
Identities = 45/130 (34%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Frame = +1
Query: 106 GAKFPYLPGSPSGSR*STAPTTQGAKNLYVIAVQGYQRSPEQTAGGRFRGHDCGHSQKG* 285
G KF G P + + A T GAKNLY+I+V+G + + +KG
Sbjct: 11 GNKFRMSLGLPVAATVNCADNT-GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGK 69
Query: 286 T*NSGK-------R*CRQWSSGSGNRSEGVMEYLYTLRTMRVS*SITRGEMKGSAITGAV 444
K R + W R +GV Y + V+ +GEMKGSAITG +
Sbjct: 70 PDLRKKVMPAVIVRQRKPW-----RRKDGVYMYFEDNAGVIVN---PKGEMKGSAITGPI 121
Query: 445 AKECADLWPR 474
KECADLWPR
Sbjct: 122 GKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 83.8 bits (198), Expect = 2e-16
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
Frame = +3
Query: 153 INCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVMPAV 320
+NCADNTG+K SV RL+++ + C G + K+ LRKKVMPAV
Sbjct: 26 VNCADNTGAKNLYIISVKGIKGRLNRLP-SAC----VGDMVMATVKKGKPDLRKKVMPAV 80
Query: 321 VIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
++RQRKP+RR+DGV++YFEDNAGVIVN KG +G
Sbjct: 81 IVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKG 114
Score = 66.9 bits (156), Expect = 2e-11
Identities = 39/77 (50%), Positives = 51/77 (66%)
Frame = +2
Query: 74 MSKXGRGGSSVERNSRISLGLPVGADNQLRRQHREQRICM*SLSKAIKGRLNRLPAAGSG 253
MSK GRGGS+ + R+SLGLPV A + + + S+ K IKGRLNRLP+A G
Sbjct: 1 MSKRGRGGSAGNK-FRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVG 58
Query: 254 XMIVATVKKGKPETPEK 304
M++ATVKKGKP+ +K
Sbjct: 59 DMVMATVKKGKPDLRKK 75
Score = 50.4 bits (115), Expect = 2e-06
Identities = 45/130 (34%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Frame = +1
Query: 106 GAKFPYLPGSPSGSR*STAPTTQGAKNLYVIAVQGYQRSPEQTAGGRFRGHDCGHSQKG* 285
G KF G P + + A T GAKNLY+I+V+G + + +KG
Sbjct: 11 GNKFRMSLGLPVAATVNCADNT-GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGK 69
Query: 286 T*NSGK-------R*CRQWSSGSGNRSEGVMEYLYTLRTMRVS*SITRGEMKGSAITGAV 444
K R + W R +GV Y + V+ +GEMKGSAITG +
Sbjct: 70 PDLRKKVMPAVIVRQRKPW-----RRKDGVYMYFEDNAGVIVN---PKGEMKGSAITGPI 121
Query: 445 AKECADLWPR 474
KECADLWPR
Sbjct: 122 GKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 83.8 bits (198), Expect = 2e-16
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
Frame = +3
Query: 153 INCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVMPAV 320
+NCADNTG+K SV RL+++ + C G + K+ LRKKVMPAV
Sbjct: 43 VNCADNTGAKNLYIISVKGIKGRLNRLP-SAC----VGDMVMATVKKGKPDLRKKVMPAV 97
Query: 321 VIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
++RQRKP+RR+DGV++YFEDNAGVIVN KG +G
Sbjct: 98 IVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKG 131
Score = 61.7 bits (143), Expect = 8e-10
Identities = 36/73 (49%), Positives = 48/73 (65%)
Frame = +2
Query: 86 GRGGSSVERNSRISLGLPVGADNQLRRQHREQRICM*SLSKAIKGRLNRLPAAGSGXMIV 265
GRGGS+ + R+SLGLPV A + + + S+ K IKGRLNRLP+A G M++
Sbjct: 22 GRGGSAGNK-FRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVM 79
Query: 266 ATVKKGKPETPEK 304
ATVKKGKP+ +K
Sbjct: 80 ATVKKGKPDLRKK 92
Score = 50.4 bits (115), Expect = 2e-06
Identities = 45/130 (34%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Frame = +1
Query: 106 GAKFPYLPGSPSGSR*STAPTTQGAKNLYVIAVQGYQRSPEQTAGGRFRGHDCGHSQKG* 285
G KF G P + + A T GAKNLY+I+V+G + + +KG
Sbjct: 28 GNKFRMSLGLPVAATVNCADNT-GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGK 86
Query: 286 T*NSGK-------R*CRQWSSGSGNRSEGVMEYLYTLRTMRVS*SITRGEMKGSAITGAV 444
K R + W R +GV Y + V+ +GEMKGSAITG +
Sbjct: 87 PDLRKKVMPAVIVRQRKPW-----RRKDGVYMYFEDNAGVIVN---PKGEMKGSAITGPI 138
Query: 445 AKECADLWPR 474
KECADLWPR
Sbjct: 139 GKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 35.5 bits (78), Expect = 0.058
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 291 KLRK-KVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKG 410
K++K V+ VV+R R DG I F+DNA V+VNNKG
Sbjct: 99 KVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKG 139
>01_01_0731 - 5694273-5694584
Length = 103
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 233 LPAAGSGXMIVATVKKGKPETPEKGNAGSGH 325
+P + +G VA K G+P P G + GH
Sbjct: 72 VPVSSTGGQFVAVAKTGRPPLPPSGPSDGGH 102
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 241 GRFRGH-DCGHSQKG*T*NSGKR*CRQWSSGSGNRSE 348
GR RGH G +G SG R W SG GNR +
Sbjct: 1391 GRGRGHFGRGDRNQGNNYGSGDNNDRTWGSGRGNRDQ 1427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,041,109
Number of Sequences: 37544
Number of extensions: 358589
Number of successful extensions: 879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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