Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E03
         (901 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)           67   2e-11
SB_19169| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)                29   3.9  
SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)                     29   6.8  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 39/73 (53%), Positives = 50/73 (68%)
 Frame = +2

Query: 86  GRGGSSVERNSRISLGLPVGADNQLRRQHREQRICM*SLSKAIKGRLNRLPAAGSGXMIV 265
           GRGG+S  +  RI+LGLPVGA          + + + ++ K IKGRLNRLPAA SG M++
Sbjct: 24  GRGGTSGGK-FRIALGLPVGAVINCADNTGGKNLYIIAV-KGIKGRLNRLPAAASGDMVL 81

Query: 266 ATVKKGKPETPEK 304
           ATVKKGKPE  +K
Sbjct: 82  ATVKKGKPELRKK 94



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 38/86 (44%), Positives = 48/86 (55%)
 Frame = +3

Query: 150 IINCADNTGSKESVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVMPAVVIR 329
           +INCADNTG K         + K           G  +    K+   +LRKKVMPAVVIR
Sbjct: 44  VINCADNTGGKNLYIIAVKGI-KGRLNRLPAAASGDMVLATVKKGKPELRKKVMPAVVIR 102

Query: 330 QRKPFRRRDGVFIYFEDNAGVIVNNK 407
           QRK +RR++GVF+YFE N  V V  +
Sbjct: 103 QRKAYRRKNGVFLYFEANIKVRVRKQ 128


>SB_19169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 402 NKGRNEG-LGHHRGCSQRMC*SVAAYCLKRE 491
           N+GR E   G+ RGCS RM  S  + CLK +
Sbjct: 5   NRGRVEPRYGNSRGCSTRMTRSFGSLCLKND 35


>SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 888

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 478 QYAATDQHILWLQPL*WPSPSFRPLLLTMTPALSSKYIN 362
           +Y +   H   +QP  W  P+F   ++ +TP+LS    N
Sbjct: 313 EYLSPYDHYFGIQPKLWEDPNFANHMMAVTPSLSVNSTN 351


>SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)
          Length = 457

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 44  PGF*NFXYNKMSKXGRGGSSVERNSRISLGLPVGADNQLRRQHREQRIC 190
           P F N  YN++S+ G GG  + +   + L   +  D    +QH  Q +C
Sbjct: 229 PEFRNAIYNQLSENG-GGGGLGQTLDLPLVGDINGDEMAWQQHDVQELC 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,428,611
Number of Sequences: 59808
Number of extensions: 365604
Number of successful extensions: 912
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)