Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E03
         (901 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    26   1.4  
AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    26   1.8  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    26   1.8  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    23   9.6  

>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 253 PGTGRRQSVQATFDSLGQ-RSHTDSLLPVLSAQ 158
           PGTG R S+Q   D + Q RS +   LPV   Q
Sbjct: 24  PGTGDRASIQRLEDEMVQERSFSQRALPVPRTQ 56


>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 611

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 98  SSVERNSRISLGLPVGADNQLRRQHREQRI 187
           SS+ RN+  +LGL +    QL++Q ++Q++
Sbjct: 44  SSIARNASFTLGLGLANVIQLQQQQQQQQL 73


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 461 SAHSLATAPVMAEPFISPLVIDYDTRIVLKVYKYS 357
           +   +A   V+   F SP ++ Y+T  VLK Y YS
Sbjct: 162 TGRGIAGESVIDVTFASPSIVRYNTWEVLKSYWYS 196


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/proton
            exchanger 3 protein.
          Length = 1221

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 203  SKAIKGRLNRLPAAGSGXMIVATVKKGKPETPEKGNAGSGHQAA 334
            +K++ G L R  ++GSG +++  V   +  TP       G  AA
Sbjct: 1000 AKSVIG-LFRRESSGSGGVVIGGVTDSETSTPVAATTPVGRMAA 1042


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,619
Number of Sequences: 2352
Number of extensions: 12916
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97160985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)