Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_E03
(901 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-3487|AAF46914.1| 140|Drosophila melanogaster CG3661-PA... 91 2e-18
M85295-1|AAA28867.1| 140|Drosophila melanogaster ribosomal prot... 77 4e-14
Z11527-1|CAA77616.1| 614|Drosophila melanogaster CYS3HIS finger... 29 8.7
BT021256-1|AAX33404.1| 608|Drosophila melanogaster RE58038p pro... 29 8.7
AE014297-3282|AAO41594.1| 599|Drosophila melanogaster CG4620-PB... 29 8.7
AE014297-3281|AAO41593.1| 599|Drosophila melanogaster CG4620-PA... 29 8.7
>AE013599-3487|AAF46914.1| 140|Drosophila melanogaster CG3661-PA
protein.
Length = 140
Score = 91.1 bits (216), Expect = 2e-18
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 4/95 (4%)
Frame = +3
Query: 150 IINCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVMPA 317
++NCADNTG+K +V RL+++ G K+ +LRKKVMPA
Sbjct: 25 VMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGV-----GDMFVATVKKGKPELRKKVMPA 79
Query: 318 VVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
VVIRQRKPFRRRDGVFIYFEDNAGVIVNNKG +G
Sbjct: 80 VVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 114
Score = 69.3 bits (162), Expect = 7e-12
Identities = 41/77 (53%), Positives = 51/77 (66%)
Frame = +2
Query: 74 MSKXGRGGSSVERNSRISLGLPVGADNQLRRQHREQRICM*SLSKAIKGRLNRLPAAGSG 253
MSK GRGG++ + RISLGLPVGA + + + ++ I+GRLNRLPAAG G
Sbjct: 1 MSKRGRGGTAGGK-FRISLGLPVGAVMNCADNTGAKNLYVIAVH-GIRGRLNRLPAAGVG 58
Query: 254 XMIVATVKKGKPETPEK 304
M VATVKKGKPE +K
Sbjct: 59 DMFVATVKKGKPELRKK 75
Score = 56.0 bits (129), Expect = 7e-08
Identities = 51/127 (40%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Frame = +1
Query: 106 GAKFPYLPGSPSGSR*STAPTTQGAKNLYVIAVQGYQ----RSPEQTAGGRFRGHDCGHS 273
G KF G P G+ + A T GAKNLYVIAV G + R P G F
Sbjct: 11 GGKFRISLGLPVGAVMNCADNT-GAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGK 69
Query: 274 QKG*T*NSGKR*CRQWSSGSGNRSEGVMEYLYTLRTMRVS*SITRGEMKGSAITGAVAKE 453
+ RQ R +GV Y + V+ +GEMKGSAITG VAKE
Sbjct: 70 PELRKKVMPAVVIRQRKPF--RRRDGVFIYFEDNAGVIVN---NKGEMKGSAITGPVAKE 124
Query: 454 CADLWPR 474
CADLWPR
Sbjct: 125 CADLWPR 131
>M85295-1|AAA28867.1| 140|Drosophila melanogaster ribosomal protein
L17A protein.
Length = 140
Score = 76.6 bits (180), Expect = 4e-14
Identities = 47/95 (49%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Frame = +3
Query: 150 IINCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVMPA 317
++NCADNTG+K +V RL+++ G K+ +LRKKV
Sbjct: 25 VMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGV-----GDMFVATVKKGKPELRKKVSVV 79
Query: 318 VVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
RQRKPFRRRDGVFIYFEDNAGVIVNNKG +G
Sbjct: 80 PSARQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 114
Score = 69.3 bits (162), Expect = 7e-12
Identities = 41/77 (53%), Positives = 51/77 (66%)
Frame = +2
Query: 74 MSKXGRGGSSVERNSRISLGLPVGADNQLRRQHREQRICM*SLSKAIKGRLNRLPAAGSG 253
MSK GRGG++ + RISLGLPVGA + + + ++ I+GRLNRLPAAG G
Sbjct: 1 MSKRGRGGTAGGK-FRISLGLPVGAVMNCADNTGAKNLYVIAVH-GIRGRLNRLPAAGVG 58
Query: 254 XMIVATVKKGKPETPEK 304
M VATVKKGKPE +K
Sbjct: 59 DMFVATVKKGKPELRKK 75
Score = 58.0 bits (134), Expect = 2e-08
Identities = 52/127 (40%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Frame = +1
Query: 106 GAKFPYLPGSPSGSR*STAPTTQGAKNLYVIAVQGYQ----RSPEQTAGGRFRGHDCGHS 273
G KF G P G+ + A T GAKNLYVIAV G + R P G F
Sbjct: 11 GGKFRISLGLPVGAVMNCADNT-GAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGK 69
Query: 274 QKG*T*NSGKR*CRQWSSGSGNRSEGVMEYLYTLRTMRVS*SITRGEMKGSAITGAVAKE 453
+ S RQ R +GV Y + V+ +GEMKGSAITG VAKE
Sbjct: 70 PELRKKVSVVPSARQRKPF--RRRDGVFIYFEDNAGVIVN---NKGEMKGSAITGPVAKE 124
Query: 454 CADLWPR 474
CADLWPR
Sbjct: 125 CADLWPR 131
>Z11527-1|CAA77616.1| 614|Drosophila melanogaster CYS3HIS finger
protein protein.
Length = 614
Score = 29.1 bits (62), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 327 RQRKPFRRRDGVFIYFEDN 383
R+R+P R+RDG F Y DN
Sbjct: 72 RRRRPVRKRDGTFNYSADN 90
>BT021256-1|AAX33404.1| 608|Drosophila melanogaster RE58038p
protein.
Length = 608
Score = 29.1 bits (62), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 327 RQRKPFRRRDGVFIYFEDN 383
R+R+P R+RDG F Y DN
Sbjct: 66 RRRRPVRKRDGTFNYSADN 84
>AE014297-3282|AAO41594.1| 599|Drosophila melanogaster CG4620-PB,
isoform B protein.
Length = 599
Score = 29.1 bits (62), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 327 RQRKPFRRRDGVFIYFEDN 383
R+R+P R+RDG F Y DN
Sbjct: 57 RRRRPVRKRDGTFNYSADN 75
>AE014297-3281|AAO41593.1| 599|Drosophila melanogaster CG4620-PA,
isoform A protein.
Length = 599
Score = 29.1 bits (62), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 327 RQRKPFRRRDGVFIYFEDN 383
R+R+P R+RDG F Y DN
Sbjct: 57 RRRRPVRKRDGTFNYSADN 75
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,098,971
Number of Sequences: 53049
Number of extensions: 577974
Number of successful extensions: 1384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4382549442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -