Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E03
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...    80   2e-15

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 48/95 (50%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
 Frame = +3

Query: 150 IINCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVMPA 317
           ++NCADNTG+K     SV     RL+++          G       K+   +LRKKV+  
Sbjct: 25  VMNCADNTGAKNLFVISVYGIRGRLNRLPSAGV-----GDMFVCSVKKGKPELRKKVLQG 79

Query: 318 VVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
           VVIRQRK FRR+DG FIYFEDNAGVIVNNKG  +G
Sbjct: 80  VVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKG 114



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 40/77 (51%), Positives = 50/77 (64%)
 Frame = +2

Query: 74  MSKXGRGGSSVERNSRISLGLPVGADNQLRRQHREQRICM*SLSKAIKGRLNRLPAAGSG 253
           MSK GRGG+S  +  RISLGLPVGA          + + + S+   I+GRLNRLP+AG G
Sbjct: 1   MSKRGRGGASGAK-FRISLGLPVGAVMNCADNTGAKNLFVISVY-GIRGRLNRLPSAGVG 58

Query: 254 XMIVATVKKGKPETPEK 304
            M V +VKKGKPE  +K
Sbjct: 59  DMFVCSVKKGKPELRKK 75



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 51/128 (39%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
 Frame = +1

Query: 106 GAKFPYLPGSPSGSR*STAPTTQGAKNLYVIAVQGYQ----RSPEQTAGGRFR-GHDCGH 270
           GAKF    G P G+  + A  T GAKNL+VI+V G +    R P    G  F      G 
Sbjct: 11  GAKFRISLGLPVGAVMNCADNT-GAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGK 69

Query: 271 SQKG*T*NSGKR*CRQWSSGSGNRSEGVMEYLYTLRTMRVS*SITRGEMKGSAITGAVAK 450
            +       G    RQ       R +G   Y      + V+    +GEMKGSAITG VAK
Sbjct: 70  PELRKKVLQGVV-IRQRKQF--RRKDGTFIYFEDNAGVIVN---NKGEMKGSAITGPVAK 123

Query: 451 ECADLWPR 474
           ECADLWPR
Sbjct: 124 ECADLWPR 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,636,293
Number of Sequences: 27780
Number of extensions: 273037
Number of successful extensions: 697
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)