Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_E03
(901 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 84 1e-16
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 84 1e-16
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 84 1e-16
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 32 0.45
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 31 0.79
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 31 0.79
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 28 7.3
At3g08840.2 68416.m01026 D-alanine--D-alanine ligase family simi... 28 9.7
>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
tabacum]
Length = 140
Score = 83.8 bits (198), Expect = 1e-16
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
Frame = +3
Query: 153 INCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVMPAV 320
+NCADNTG+K SV RL+++ + C G + K+ LRKKV+PAV
Sbjct: 26 VNCADNTGAKNLYIISVKGIKGRLNRLP-SAC----VGDMVMATVKKGKPDLRKKVLPAV 80
Query: 321 VIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
++RQRKP+RR+DGVF+YFEDNAGVIVN KG +G
Sbjct: 81 IVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKG 114
Score = 66.9 bits (156), Expect = 2e-11
Identities = 39/77 (50%), Positives = 51/77 (66%)
Frame = +2
Query: 74 MSKXGRGGSSVERNSRISLGLPVGADNQLRRQHREQRICM*SLSKAIKGRLNRLPAAGSG 253
MSK GRGG+S + R+SLGLPV A + + + S+ K IKGRLNRLP+A G
Sbjct: 1 MSKRGRGGTSGNK-FRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVG 58
Query: 254 XMIVATVKKGKPETPEK 304
M++ATVKKGKP+ +K
Sbjct: 59 DMVMATVKKGKPDLRKK 75
Score = 50.8 bits (116), Expect = 1e-06
Identities = 45/130 (34%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Frame = +1
Query: 106 GAKFPYLPGSPSGSR*STAPTTQGAKNLYVIAVQGYQRSPEQTAGGRFRGHDCGHSQKG* 285
G KF G P + + A T GAKNLY+I+V+G + + +KG
Sbjct: 11 GNKFRMSLGLPVAATVNCADNT-GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGK 69
Query: 286 T*NSGK-------R*CRQWSSGSGNRSEGVMEYLYTLRTMRVS*SITRGEMKGSAITGAV 444
K R + W R +GV Y + V+ +GEMKGSAITG +
Sbjct: 70 PDLRKKVLPAVIVRQRKPW-----RRKDGVFMYFEDNAGVIVN---PKGEMKGSAITGPI 121
Query: 445 AKECADLWPR 474
KECADLWPR
Sbjct: 122 GKECADLWPR 131
>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
Length = 140
Score = 83.8 bits (198), Expect = 1e-16
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
Frame = +3
Query: 153 INCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVMPAV 320
+NCADNTG+K SV RL+++ + C G + K+ LRKKV+PAV
Sbjct: 26 VNCADNTGAKNLYIISVKGIKGRLNRLP-SAC----VGDMVMATVKKGKPDLRKKVLPAV 80
Query: 321 VIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
++RQRKP+RR+DGVF+YFEDNAGVIVN KG +G
Sbjct: 81 IVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKG 114
Score = 66.9 bits (156), Expect = 2e-11
Identities = 39/77 (50%), Positives = 51/77 (66%)
Frame = +2
Query: 74 MSKXGRGGSSVERNSRISLGLPVGADNQLRRQHREQRICM*SLSKAIKGRLNRLPAAGSG 253
MSK GRGG+S + R+SLGLPV A + + + S+ K IKGRLNRLP+A G
Sbjct: 1 MSKRGRGGTSGNK-FRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVG 58
Query: 254 XMIVATVKKGKPETPEK 304
M++ATVKKGKP+ +K
Sbjct: 59 DMVMATVKKGKPDLRKK 75
Score = 50.8 bits (116), Expect = 1e-06
Identities = 45/130 (34%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Frame = +1
Query: 106 GAKFPYLPGSPSGSR*STAPTTQGAKNLYVIAVQGYQRSPEQTAGGRFRGHDCGHSQKG* 285
G KF G P + + A T GAKNLY+I+V+G + + +KG
Sbjct: 11 GNKFRMSLGLPVAATVNCADNT-GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGK 69
Query: 286 T*NSGK-------R*CRQWSSGSGNRSEGVMEYLYTLRTMRVS*SITRGEMKGSAITGAV 444
K R + W R +GV Y + V+ +GEMKGSAITG +
Sbjct: 70 PDLRKKVLPAVIVRQRKPW-----RRKDGVFMYFEDNAGVIVN---PKGEMKGSAITGPI 121
Query: 445 AKECADLWPR 474
KECADLWPR
Sbjct: 122 GKECADLWPR 131
>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
identical to GB:AAB80655
Length = 140
Score = 83.8 bits (198), Expect = 1e-16
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
Frame = +3
Query: 153 INCADNTGSKE----SVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRKKVMPAV 320
+NCADNTG+K SV RL+++ + C G + K+ LRKKV+PAV
Sbjct: 26 VNCADNTGAKNLYIISVKGIKGRLNRLP-SAC----VGDMVMATVKKGKPDLRKKVLPAV 80
Query: 321 VIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRNEG 422
++RQRKP+RR+DGVF+YFEDNAGVIVN KG +G
Sbjct: 81 IVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKG 114
Score = 66.9 bits (156), Expect = 2e-11
Identities = 39/77 (50%), Positives = 51/77 (66%)
Frame = +2
Query: 74 MSKXGRGGSSVERNSRISLGLPVGADNQLRRQHREQRICM*SLSKAIKGRLNRLPAAGSG 253
MSK GRGG+S + R+SLGLPV A + + + S+ K IKGRLNRLP+A G
Sbjct: 1 MSKRGRGGTSGNK-FRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVG 58
Query: 254 XMIVATVKKGKPETPEK 304
M++ATVKKGKP+ +K
Sbjct: 59 DMVMATVKKGKPDLRKK 75
Score = 50.8 bits (116), Expect = 1e-06
Identities = 45/130 (34%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Frame = +1
Query: 106 GAKFPYLPGSPSGSR*STAPTTQGAKNLYVIAVQGYQRSPEQTAGGRFRGHDCGHSQKG* 285
G KF G P + + A T GAKNLY+I+V+G + + +KG
Sbjct: 11 GNKFRMSLGLPVAATVNCADNT-GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGK 69
Query: 286 T*NSGK-------R*CRQWSSGSGNRSEGVMEYLYTLRTMRVS*SITRGEMKGSAITGAV 444
K R + W R +GV Y + V+ +GEMKGSAITG +
Sbjct: 70 PDLRKKVLPAVIVRQRKPW-----RRKDGVFMYFEDNAGVIVN---PKGEMKGSAITGPI 121
Query: 445 AKECADLWPR 474
KECADLWPR
Sbjct: 122 GKECADLWPR 131
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 32.3 bits (70), Expect = 0.45
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 291 KLRK-KVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIV---NNKGRNEGLGHHR 437
K++K V+ VV+R P R DG + F+DNA V+V KG+N G R
Sbjct: 108 KVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKR 160
>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 172
Score = 31.5 bits (68), Expect = 0.79
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 138 QWEQIINCADNTGSKESVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRK-KVMP 314
Q ++ DN+G+K+ +C + + K A R + N K++K V+
Sbjct: 48 QMGTVLKVVDNSGAKKVMCIQALKGKKGA-----RLGDTIVASVKEAMPNGKVKKGAVVY 102
Query: 315 AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRN 416
VV+R R DG + F+DNA V+V++K +N
Sbjct: 103 GVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKN 136
>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 173
Score = 31.5 bits (68), Expect = 0.79
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 138 QWEQIINCADNTGSKESVCDRCPRLSKVA*TDCRRPVPGX*LWPQSKRVNLKLRK-KVMP 314
Q ++ DN+G+K+ +C + + K A R + N K++K V+
Sbjct: 49 QMGTVLKVVDNSGAKKVMCIQALKGKKGA-----RLGDTIVASVKEAMPNGKVKKGAVVY 103
Query: 315 AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGRN 416
VV+R R DG + F+DNA V+V++K +N
Sbjct: 104 GVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKN 137
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 386 RIVLKVYKYSITPSERFPLPDDHCRHYL 303
RI L V K + P P P +CRHYL
Sbjct: 333 RIALGVKKLKLKPVAPKPKPIKYCRHYL 360
>At3g08840.2 68416.m01026 D-alanine--D-alanine ligase family similar
to D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
(Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
(Swiss-Prot:P95803) [Streptococcus mutans]
Length = 937
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 244 GRRQSVQATFDSLGQRSHTDSLLPVLSAQL---IICSHWETQGDTGISL 107
GRR+ V+ T +G+R SL P L+ + I+ + QG TGI+L
Sbjct: 797 GRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINL 845
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,009,129
Number of Sequences: 28952
Number of extensions: 256109
Number of successful extensions: 623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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