Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_E02
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   4.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 403 WCAVPCRRPWNNL 441
           WCAV C R   NL
Sbjct: 398 WCAVSCLRELRNL 410


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 293 VSVNIGTVDVSVANVNGILDCLRHLAWLR 207
           V VN G   V + NVN     ++   WLR
Sbjct: 52  VHVNFGLAFVQLINVNEKNQIMKSNVWLR 80


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 290 KREGSRRSYNQQN*GRSRNEGRSVHN 367
           KR G+R++ NQ N   +      VH+
Sbjct: 514 KRNGNRQNDNQNNQNDNNRNDNQVHH 539


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 502 SRLPCRPGASVSGTDPSTESSDCSRVS 422
           S  P  PG   S   PS+ SS  S VS
Sbjct: 78  STSPSYPGGGSSSPSPSSPSSFFSSVS 104


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 484 PGASVSGTDPSTESSDCSRVSCRAPRT 404
           P AS +GT P+T S+  +  +  A  T
Sbjct: 229 PAASATGTGPATPSAVVATSNATAAMT 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,711
Number of Sequences: 438
Number of extensions: 4058
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)