Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D24
         (942 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          39   6e-05
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      39   6e-05

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 39.1 bits (87), Expect = 6e-05
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
 Frame = +3

Query: 213 DXVFVEKXKKIXXXX*DVXXXXXDD-EYYKIGKXYDXEMNMXXXXXXKXVEEFXKMXRSG 389
           D  F+ K KKI      V      D E+Y +G+ YD E NM        V++F    + G
Sbjct: 29  DMDFLHKQKKIFDLLLYVRQADLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQG 88

Query: 390 -FMXKNLEXXVFYXKMRDEXIXXXXLXYXXKXFEXXXKXXCFXXVXXNXG 536
            F+ +N        + + E      L Y  K F+   K   +  +  N G
Sbjct: 89  MFLSRNAIFTPLNSEQKYEVRMLFELLYNAKDFQTFYKTAAWARLRMNSG 138


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 39.1 bits (87), Expect = 6e-05
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
 Frame = +3

Query: 213 DXVFVEKXKKIXXXX*DVXXXXXDD-EYYKIGKXYDXEMNMXXXXXXKXVEEFXKMXRSG 389
           D  F+ K KKI      V      D E+Y +G+ YD E NM        V++F    + G
Sbjct: 29  DMDFLHKQKKIFDLLLYVRQADLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQG 88

Query: 390 -FMXKNLEXXVFYXKMRDEXIXXXXLXYXXKXFEXXXKXXCFXXVXXNXG 536
            F+ +N        + + E      L Y  K F+   K   +  +  N G
Sbjct: 89  MFLSRNAIFTPLNSEQKYEVRMLFELLYNAKDFQTFYKTAAWARLRMNSG 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,461
Number of Sequences: 438
Number of extensions: 440
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)