Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D23
         (962 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0580 + 4745639-4746528,4746666-4746747                           32   0.78 
02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890...    31   1.8  
12_01_0196 + 1451166-1451443,1453035-1453478,1453569-1454145           28   9.6  

>12_01_0580 + 4745639-4746528,4746666-4746747
          Length = 323

 Score = 31.9 bits (69), Expect = 0.78
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 72  HQXXVMLRIGAFPNHGLSLRCVLDVSHEVISQQRSR 179
           ++  V + +GA+P H L LRCV ++S E   + ++R
Sbjct: 273 YEPGVFITVGAYPGHRLQLRCV-ELSREKFGEVKAR 307


>02_03_0143 +
           15685242-15686298,15688167-15688265,15688998-15689072,
           15689309-15689364,15689786-15689875
          Length = 458

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 123 SLRCVLDVSHEVISQQRSRYASRLLAIR 206
           +LR  LD+ HE+ISQQR++YAS  L  R
Sbjct: 67  NLRLALDL-HELISQQRNKYASLQLLSR 93


>12_01_0196 + 1451166-1451443,1453035-1453478,1453569-1454145
          Length = 432

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +3

Query: 123 SLRCVLDVSHEVISQQRSRYASRLLAIR 206
           +LR  LD+ HE ISQQR+ YAS  L  R
Sbjct: 127 NLRLALDL-HEFISQQRNGYASLQLLSR 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,481
Number of Sequences: 37544
Number of extensions: 202559
Number of successful extensions: 348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)