Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D22
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    28   2.1  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    27   3.7  

>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 248 RFDRLGRGWHACSRCRKQSYLKQRRQKSAWKECMVWSR 135
           +++   R +  C RCR+  Y  +  Q  AW     W R
Sbjct: 487 KWEEHSRQFAKCRRCRRTKYCSKECQHQAWPGHSRWCR 524


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 220 CHPRPNLSKRKGPDLKPFSEPCGPNC 297
           CH  P+ + +   DLK F   CG NC
Sbjct: 45  CHGNPSDTSKLPLDLKLFRWDCGSNC 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,870
Number of Sequences: 5004
Number of extensions: 21924
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)