Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D22
         (912 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_53535| Best HMM Match : zf-C2H2 (HMM E-Value=4.8e-32)               29   6.9  

>SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 28/41 (68%), Positives = 33/41 (80%)
 Frame = +1

Query: 85  PXEXTPNVDGPLAXPVPRDQTMHSFHALFCRRCFKYDCFLH 207
           P E TPN+D P A  V R+Q++HSFH LFCRRC+KYDCFLH
Sbjct: 207 PPECTPNIDSPEAQSVSREQSLHSFHMLFCRRCYKYDCFLH 247



 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 2/130 (1%)
 Frame = +1

Query: 529 EWTGSDVSLHRALHKVFPXNYXAQAQLMLSKTCXQVWW-XXXXXXXXXPGAXVDLTPXXK 705
           EW+G++ SL R L  V+  NY   A+L+ +KTC +V++          P      TP  K
Sbjct: 288 EWSGAEASLLRVLRTVYFNNYCTIAKLIETKTCKEVYFRAFGESEESLPVVDDTNTPPRK 347

Query: 706 KKXSTGCGPCTXXRYXXRRXRLXP-VYXXXPXXHPXQXXXXLCPCLXXXXXXXKXCXXXX 882
           +K           +   ++      VY   P  HP       C C+       K C    
Sbjct: 348 RKRKHRMWSLHCRKIQLKKDSTSTHVYNYIPCDHPGLPCDQSCLCVMTQNFCEKFCQCNS 407

Query: 883 XCXNXFXGCR 912
            C N F GCR
Sbjct: 408 DCQNRFPGCR 417


>SB_53535| Best HMM Match : zf-C2H2 (HMM E-Value=4.8e-32)
          Length = 323

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 DQTMHSFHALFCRRCFKYDCFLHRLQACH 225
           D+T  ++   FC + F+Y C+L R    H
Sbjct: 237 DKTGRTWKCSFCSKAFQYPCYLRRHMRSH 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,371,881
Number of Sequences: 59808
Number of extensions: 227383
Number of successful extensions: 661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)