Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D22
         (912 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t...    43   3e-04
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    40   0.003
At1g02580.1 68414.m00209 maternal embryogenesis control protein ...    32   0.61 
At2g05530.1 68415.m00585 glycine-rich protein                          29   3.2  
At5g53150.1 68418.m06607 DNAJ heat shock N-terminal domain-conta...    28   9.9  

>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
           enhancer of zeste-like protein 1(EZA1) (GI:4185507)
           [Arabidopsis thaliana]; similar to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 856

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +1

Query: 148 MHSFHALFCRRCFKYDCFLHRLQACHPRPNLSKRK--GPDLKPFSEPCGPNCYMLLDGMR 321
           + SF  LFCRRC  +DC LH      P  + S+++    D +   +PC  +CY+ L  +R
Sbjct: 258 LDSFDNLFCRRCLVFDCRLH--GCSQPLISASEKQPYWSDYEGDRKPCSKHCYLQLKAVR 315

Query: 322 E 324
           E
Sbjct: 316 E 316



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 829 CPCLXXXXXXXKXCXXXXXCXNXFXGC 909
           CPCL       K C     C N F GC
Sbjct: 621 CPCLTNETCCEKYCGCSKSCKNRFRGC 647


>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 148 MHSFHALFCRRCFKYDCFLHRLQACHPRPNLSKRKGPDLKPFSE--PCGPNCYMLL 309
           + SF  LFCRRC  +DC LH        P  +++  P   P  E   CG NCY  L
Sbjct: 268 LDSFDNLFCRRCLVFDCRLHGCSQDLIFP--AEKPAPWCPPVDENLTCGANCYKTL 321



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 829 CPCLXXXXXXXKXCXXXXXCXNXFXGC 909
           CPCL       K C     C N F GC
Sbjct: 665 CPCLLNGTCCEKYCGCPKSCKNRFRGC 691


>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
           MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
           GI:3089625 from [Arabidopsis thaliana]; contains Pfam
           profile PF00856: SET domain
          Length = 689

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 172 CRRCFKYDCFLHRLQACHPRPNLSKRKGPDLKPFS-EPCGPNCYMLLDGMRE 324
           CRRC  +DC +H  +   P    S+ K    +    +PC  +CY+ +  + E
Sbjct: 269 CRRCMIFDCHMH--EKYEPESRSSEDKSSLFEDEDRQPCSEHCYLKVRSVTE 318



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 829 CPCLXXXXXXXKXCXXXXXCXNXFXGC 909
           CPCL       K C     C N F GC
Sbjct: 460 CPCLTHENCCEKYCGCSKDCNNRFGGC 486


>At2g05530.1 68415.m00585 glycine-rich protein 
          Length = 115

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 290 GPHGSEKGLRSGPLRFDRLGRGWHACSRC 204
           G +G   G R G  R+    RG+H CSRC
Sbjct: 73  GYNGGGHGGRHGYCRYGCCYRGYHGCSRC 101


>At5g53150.1 68418.m06607 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 755

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 212 YKRATRGPTCRSARDPTSSPSPSRAGPTATCCWTGC 319
           YK ATR P  R  R  T SP+       ++  WT C
Sbjct: 173 YKPATRKPAARMDRSRTGSPAFVYPTQESSTFWTMC 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,484,606
Number of Sequences: 28952
Number of extensions: 139778
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)