Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D21
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0420 - 18920511-18920717,18920968-18921209,18921786-189219...    73   4e-13
10_07_0069 - 12576197-12576290,12576658-12576851,12577671-125777...    43   3e-04
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522...    40   0.002
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124...    39   0.005
11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602...    38   0.014
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968...    28   8.8  

>12_02_0420 -
           18920511-18920717,18920968-18921209,18921786-18921927,
           18922012-18922164,18922845-18923243
          Length = 380

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 33/73 (45%), Positives = 47/73 (64%)
 Frame = +2

Query: 641 SGEMMHXQLVAAGVDATLILXSAVGYVMEXVDIVMIGAEGVTESGGIINXIGTYSLGIXX 820
           +G  M  +L A G+   +++ SAV Y M+ VD+V +GA+GV ESGGIIN +GTY + +  
Sbjct: 238 TGLRMSNELAALGIPVKVLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVA 297

Query: 821 LXLXKPXYVLXES 859
             + KP YV  ES
Sbjct: 298 HSMNKPVYVAAES 310



 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = +3

Query: 351 AISSGCELFMR-VYYICQIRHKEF*RM*KNYVTKR*YISGTSC*KHEGKVAKQALSFICD 527
           ++S+ C+LFMR V     + H++F    K+ + +R    G    K    +A  +  FI D
Sbjct: 141 SLSAACDLFMRFVTRTSHLEHEKFDAA-KSRLIERGEKFGEISLKARKTIAMLSQDFISD 199

Query: 528 GCKIXXHSRSRVVLQAMIEAIKANKRFEVFITVSAPD 638
           GC I  H  SRVVL+ +  A    K F V  T   PD
Sbjct: 200 GCTILVHGYSRVVLEVLKLAASNRKLFRVLCTEGRPD 236


>10_07_0069 -
           12576197-12576290,12576658-12576851,12577671-12577796,
           12577879-12577981,12578085-12578192,12579343-12579472,
           12579685-12579966,12581046-12581200,12581306-12581358
          Length = 414

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
 Frame = +2

Query: 587 YKSKQKI*SLHHSICTG---HSGEMMHXQLVAAGVDATLILXSAVGYVMEXVDIVMIGAE 757
           Y +K+K  S    +  G   + G ++  +LV  GV  T+I  SAV  ++  V++V++GA 
Sbjct: 224 YAAKEKKRSFRVFVAEGAPRYKGHVLAKELVEKGVQTTVITDSAVFAMISRVNMVIVGAH 283

Query: 758 GVTESGGIINXIG 796
            +  +GG+I  +G
Sbjct: 284 AIMANGGVIAPVG 296


>12_02_1123 -
           26250300-26250362,26251988-26252042,26252128-26252224,
           26252364-26253048,26253354-26253721,26253931-26254074,
           26254925-26255276
          Length = 587

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +2

Query: 638 HSGEMMHXQLVAAGVDATLILXSAVGYVMEXVDIVMIGAEGVTESGGIINXIGTYSLGI 814
           + G+ +  +LVA G+  T    +A+ Y+M  V  V +GA  +  +G + + +GT ++ +
Sbjct: 446 NEGQALLHRLVAKGISCTYTHINAISYIMHEVTRVFLGASSILSNGAVYSSVGTAAVAM 504


>03_05_0478 -
           24712157-24712177,24712206-24712260,24712377-24712473,
           24712558-24713302,24713822-24714189,24714279-24714419,
           24715480-24715849
          Length = 598

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = +2

Query: 644 GEMMHXQLVAAGVDATLILXSAVGYVMEXVDIVMIGAEGVTESGGIINXIGTYSLGIXXL 823
           G+ +  +LV  G++ T    +A+ Y+M  V  V +GA  +  +G + + +GT S+ +   
Sbjct: 453 GQGLLRRLVEKGINCTYTHINAISYIMHEVTRVFLGASSILSNGTVYSRVGTASVAMVAH 512

Query: 824 XLXKPXYVLXES 859
               P  V  E+
Sbjct: 513 AFGIPVLVCCEA 524


>11_01_0728 +
           6023361-6023495,6024880-6025212,6025306-6025361,
           6025526-6025684,6025790-6025889,6026481-6026623,
           6026728-6026833,6027139-6027277,6027363-6027631,
           6027734-6027820
          Length = 508

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +2

Query: 662 QLVAAGVDATLILXSAVGYVMEX--VDIVMIGAEGVTESGGIINXIGTYSLGI 814
           +LV   V ATLI  SA   +M+   +  V++GA+ +  +G   N IGTY+L I
Sbjct: 352 ELVHDKVPATLIADSAAAALMKSGCIQAVIVGADRIAANGDTANKIGTYNLAI 404


>03_06_0741 +
           35893538-35895600,35896274-35896474,35896701-35896814,
           35897570-35897649,35897772-35897896,35898008-35898079
          Length = 884

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 410 QRVLKNVKKLCYKEVIYFWDKLLEARGKSSKTGFVIHL 523
           Q V K ++++  K  I+ ++ LLEA GK+ K G   +L
Sbjct: 298 QFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNL 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,450,286
Number of Sequences: 37544
Number of extensions: 380831
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)