Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D21
         (904 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3530| Best HMM Match : IF-2B (HMM E-Value=9.6e-29)                  66   5e-11
SB_14708| Best HMM Match : IF-2B (HMM E-Value=0)                       39   0.006
SB_27994| Best HMM Match : IF-2B (HMM E-Value=5.5e-23)                 36   0.034
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  31   1.3  
SB_49742| Best HMM Match : Dam (HMM E-Value=5.8)                       30   2.9  
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  

>SB_3530| Best HMM Match : IF-2B (HMM E-Value=9.6e-29)
          Length = 236

 Score = 65.7 bits (153), Expect = 5e-11
 Identities = 29/49 (59%), Positives = 36/49 (73%)
 Frame = +2

Query: 713 GYVMEXVDIVMIGAEGVTESGGIINXIGTYSLGIXXLXLXKPXYVLXES 859
           GYV+E VD+V++GAEGV ESGGIIN IGTY + +      KP YV+ ES
Sbjct: 123 GYVIEKVDLVLVGAEGVVESGGIINKIGTYQIAVMTKNANKPFYVVAES 171



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 22/38 (57%), Positives = 26/38 (68%)
 Frame = +3

Query: 525 DGCKIXXHSRSRVVLQAMIEAIKANKRFEVFITVSAPD 638
           D   I  HSRSRVVL+ +  A +  KRF+VFIT SAPD
Sbjct: 83  DSPTILTHSRSRVVLEILKMAAEQKKRFDVFITESAPD 120


>SB_14708| Best HMM Match : IF-2B (HMM E-Value=0)
          Length = 350

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
 Frame = +2

Query: 590 KSKQKI*SLHHSICT-----GHSGEMMHXQLVAAGVDATLILXSAVGYVMEX--VDIVMI 748
           +S  ++  L H  CT          +   +LV   + +TLI  SAV   M+   +  V++
Sbjct: 179 RSIHEMKQLEHVYCTETRPYNQGSRLTAYELVYEKIPSTLIADSAVSMAMKTKKISAVVV 238

Query: 749 GAEGVTESGGIINXIGTYSLGIXXLXLXKPXYV 847
           GA+ +  +G   N IGTY L +       P YV
Sbjct: 239 GADRIACNGDTANKIGTYQLALAAKHHEIPFYV 271


>SB_27994| Best HMM Match : IF-2B (HMM E-Value=5.5e-23)
          Length = 296

 Score = 36.3 bits (80), Expect = 0.034
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 638 HSGEMMHXQLVAAGVDATLILXSAVGYVMEXVDIVMIGAEGVTESGGIINXIGTYSLGI 814
           + G+ +   L   G++ T+I  SAV  +M  V+ V+IG   V   GG+    G ++L +
Sbjct: 184 YQGQELAKSLAKVGIETTIITDSAVFAIMSRVNKVIIGTHVVMADGGLRAVNGAHALAL 242


>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -1

Query: 607 NLLFAFIASIIACKTTLDRECXXILHPSQMNDKACFATFPSCF*QLVPEIYYLFVT*FFH 428
           N L   I S++AC+  +       LH   +   AC   FP+C      +IYY FV   F 
Sbjct: 201 NNLSDVIPSLVACELAIASSSNWRLHVELLEKFAC---FPNCL--SSDQIYYKFVPLLFR 255

Query: 427 ILQNSLCL 404
           +L ++  L
Sbjct: 256 LLSSNRVL 263


>SB_49742| Best HMM Match : Dam (HMM E-Value=5.8)
          Length = 219

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 509 SLFCYFSLVL-LTACPRNILPLCNIIFSHSSKLFVSNLANVINPHKQFTPR*DSWNRVDH 333
           +LF Y S    L  CPR    L   ++S   +    N+A + + + Q   + + WN V  
Sbjct: 23  TLFQYTSFPNGLACCPRKFTKLLKHVYSELRQQGFVNVAYIDDSYLQGATQLECWNNVKE 82

Query: 332 NVSL 321
            VSL
Sbjct: 83  TVSL 86


>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 488  LVLLTACPRNILPLCNIIFSHSSKLFVSNLANVINPHK 375
            L ++   PRN  P+ N +FS+  + F SN   V+NP K
Sbjct: 1433 LTIIEIVPRNSAPVMNYLFSYIYQ-FASNNNMVLNPKK 1469


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,694,008
Number of Sequences: 59808
Number of extensions: 448208
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)