Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D20
         (880 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40120.1 68415.m04934 protein kinase family protein contains ...    31   0.77 
At4g33450.1 68417.m04752 myb family transcription factor (MYB69)...    28   9.5  
At1g73460.1 68414.m08504 protein kinase family protein contains ...    28   9.5  
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc...    28   9.5  

>At2g40120.1 68415.m04934 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 570

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = -1

Query: 304 IKRIGLIVQEKSVSVHYSHTVGILHCD--PLDDLITQY----LDVIGLLSAH**GDILSY 143
           + R+ +I ++   ++ + H +GI+HCD  P + LI  Y    + +I L S+    D L  
Sbjct: 365 LSRLQVITRQCLDALVFLHGLGIIHCDLKPENILIKSYKRCAVKIIDLGSSCFRSDNLCL 424

Query: 142 FIDFI*YGGPIRTTTTPYDEK 80
           ++    Y  P      PYDEK
Sbjct: 425 YVQSRSYRAPEVILGLPYDEK 445


>At4g33450.1 68417.m04752 myb family transcription factor (MYB69)
           contains PFAM profile: Myb DNA binding domain PF00249;
           identical to cDNA  putative transcription factor (MYB69)
           mRNA, partial cds GI:3941495
          Length = 250

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 368 SLFRLLWSSF*APSPALALLTHQEDRSHRPRKERICSLLPHRRNSP 231
           S F   W +  +PS +L  L        R RK++ C L P+   SP
Sbjct: 130 STFNQTWHTVLSPSSSLTRLNRSHFGLWRYRKDKSCGLWPYSFVSP 175


>At1g73460.1 68414.m08504 protein kinase family protein contains
            protein kinase domain Pfam:PF00069
          Length = 1169

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = -1

Query: 265  SVHYSHTVGILHCD--PLDDLITQY----LDVIGLLSAH**GDILSYFIDFI*YGGPIRT 104
            S+ + H +G++HCD  P + L+  Y    + VI L S+    D L  ++    Y  P   
Sbjct: 975  SLQFLHGLGLIHCDLKPENILVKSYSRCEIKVIDLGSSCFETDHLCSYVQSRSYRAPEVI 1034

Query: 103  TTTPYDEK 80
               PYD+K
Sbjct: 1035 LGLPYDKK 1042


>At1g73450.1 68414.m08503 protein kinase, putative similar to nuclear
            serine/threonine protein kinase GI:3582644 from [Rattus
            norvegicus]
          Length = 1152

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = -1

Query: 265  SVHYSHTVGILHCD--PLDDLITQY----LDVIGLLSAH**GDILSYFIDFI*YGGPIRT 104
            S+ + H +G++HCD  P + L+  Y    + VI L S+    D L  ++    Y  P   
Sbjct: 958  SLQFLHGLGLIHCDLKPENILVKSYSRCEIKVIDLGSSCFETDHLCSYVQSRSYRAPEVI 1017

Query: 103  TTTPYDEK 80
               PYD+K
Sbjct: 1018 LGLPYDKK 1025


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,749,064
Number of Sequences: 28952
Number of extensions: 206565
Number of successful extensions: 369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)