Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D19
         (1103 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    29   7.2  
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    28   9.6  

>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
 Frame = +2

Query: 68  RXGEXGRXRQKXXEKXGEXGGXGERXGXXXXEKEXKRXKXKREXEXKE--GEXEXXXEXX 241
           + G+  + R++   +  + GG GE       E   K  K K+    K+  GE E   E  
Sbjct: 724 KHGKMKKERKRKKSESKKEGGEGEETQKEANESTKKERKRKKSESKKQSDGEEETQKEPS 783

Query: 242 XXXKREXXGXEXXXKK 289
              K+E        KK
Sbjct: 784 ESTKKERKRKNPESKK 799


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 62  KGRXGEXGRXRQKXXEKXGEXGGXGERXGXXXXEKEXKRXKXKREXEXKEGEXE 223
           +G+  +  R R++  +K  E     ER      E+E +R K +   E ++GE +
Sbjct: 130 RGKDRKRDREREERKDKEREREKDRERREREREEREKERVKERERREREDGERD 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.305    0.126    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,535,609
Number of Sequences: 28952
Number of extensions: 21002
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2763501360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)