Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D18
         (908 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    26   0.35 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   1.1  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    25   1.1  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    24   1.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.3  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   4.4  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 287 FLNSGSLRLCWSKYTQ*PKNSVPAIPTAI 201
           +  SGSL  CWS++TQ  +  +  I   I
Sbjct: 224 YKTSGSLYTCWSEFTQKTQGQIYGIKVDI 252


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 180 NHKNNVRYSCRNC 218
           +H N  RYSCR+C
Sbjct: 280 SHSNVYRYSCRDC 292


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 180 NHKNNVRYSCRNC 218
           +H N  RYSCR+C
Sbjct: 38  SHSNVYRYSCRDC 50


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 665 FHLFKYTIFYSTSSSCITLLLAFIEDRRRSETSGSFL 555
           F +  YT+ YS   +  T L+ FI+  + S +  +++
Sbjct: 359 FFVVDYTLLYSIVGAVTTYLVIFIQFDQSSNSRNNYV 395


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = -1

Query: 323 FYCAFSLRSL--NFFLN 279
           FYCAFSL  L   F+LN
Sbjct: 312 FYCAFSLYPLKSTFYLN 328


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 491 RLNNCLVYFSKL 526
           RL NC++YF+++
Sbjct: 143 RLKNCVIYFNRI 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,421
Number of Sequences: 336
Number of extensions: 3036
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)