Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D18
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    39   9e-04
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.8  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   8.5  

>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
 Frame = +1

Query: 214 IAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQ*NASRSRTLGGPVPDMNDHEAMQ-- 387
           +  T  +GY +YFD +RR DP F+K L+ R         +   L     D+   EA+Q  
Sbjct: 10  LLATAAVGYAIYFDYKRRNDPHFRKTLKRRYKKVHEAKKQEEKLATKKFDITVEEALQVV 69

Query: 388 -------------RFFLQQIQ--XXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVLQQ 522
                         FF+QQ+                       A+ V  Q  +L ++ ++
Sbjct: 70  ASTPVPSSAEEKELFFMQQVARGEQLFQQQPDNIKESAACFYSALKVYPQPVELFAIYER 129

Query: 523 TMPAPIFHLL 552
           T+P PI +LL
Sbjct: 130 TVPEPIMNLL 139


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 196 LGIAVGIAGTLFLGYCVYF-DQQRRKDP 276
           LG+ +G+  ++F GYC  F D++  K P
Sbjct: 319 LGLIMGVFNSVFAGYCTIFCDEEVLKTP 346


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +2

Query: 368 TIMKLCR--DFSCNRFNSAKSCW 430
           T+ K+C+  + SC RFN  K  W
Sbjct: 84  TVQKVCKKLNISCRRFNFEKEYW 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,946
Number of Sequences: 5004
Number of extensions: 52289
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)