Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D17
         (911 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.82 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   5.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 413 RRPRRNGIQCHPSLRNCGISACFAYLSYNGLWCC 312
           R+P  NG + HPS+ + G   C      NG   C
Sbjct: 852 RKPYVNGSEYHPSIVSLGEYKCVTCKCENGKPTC 885


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 547 RQKSFCPREWKWE 585
           R+K  CP+  KWE
Sbjct: 3   RRKQDCPKRMKWE 15


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 467 SSMNTYDVPPAAFGTPPHRRPR 402
           +  + +++PP A   P   RPR
Sbjct: 233 NKQHNFNLPPGAIPVPDKNRPR 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,307
Number of Sequences: 336
Number of extensions: 4273
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25444518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)